Jon Bančič
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View article: Water Stress Tolerance, Genomic Selection and Identification of Genomic Regions in a MAGIC Population of Eggplant
Water Stress Tolerance, Genomic Selection and Identification of Genomic Regions in a MAGIC Population of Eggplant Open
Horticultural crops are increasingly affected by water stress due to climate change, making the development of stress-tolerant varieties an urgent need. In this study, we evaluated a set of 184 Multi-parent Advanced Generation Inter-Cross …
View article: Plant breeding simulations with AlphaSimR
Plant breeding simulations with AlphaSimR Open
Plant breeding plays a crucial role in the development of high‐performing crop varieties that meet the demands of society. Emerging breeding techniques offer the potential to improve the precision and efficiency of plant breeding programs;…
View article: A framework for simulating genotype-by-environment interaction using multiplicative models
A framework for simulating genotype-by-environment interaction using multiplicative models Open
Key message The simulation of genotype-by-environment interaction using multiplicative models provides a general and scalable framework to generate realistic multi-environment datasets and model plant breeding programmes. Abstract Plant br…
View article: A framework for simulating genotype by environment interaction using multiplicative models
A framework for simulating genotype by environment interaction using multiplicative models Open
This paper develops a general framework for simulating genotype by environment interaction (GEI) using multiplicative models. Many stages of plant breeding are complicated by GEI, from the selection of potential parents to the development …
View article: Plant breeding simulations with AlphaSimR
Plant breeding simulations with AlphaSimR Open
Plant breeding plays a crucial role in the development of high-performing crop varieties that meet the demands of society. Emerging breeding techniques offer the potential to improve the precision and efficiency of plant breeding programs;…
View article: Genomic and phenotypic characterization of finger millet indicates a complex diversification history
Genomic and phenotypic characterization of finger millet indicates a complex diversification history Open
Advances in sequencing technologies mean that insights into crop diversification can now be explored in crops beyond major staples. We use a genome assembly of finger millet, an allotetraploid orphan crop, to analyze DArTseq single nucleot…
View article: Genomic selection for genotype performance and stability using information on multiple traits and multiple environments
Genomic selection for genotype performance and stability using information on multiple traits and multiple environments Open
Key message The inclusion of multiple traits and multiple environments within a partially separable factor analytic approach for genomic selection provides breeders with an informative framework to utilise genotype by environment by trait …
View article: Genomic selection strategies to increase genetic gain in tea breeding programs
Genomic selection strategies to increase genetic gain in tea breeding programs Open
Tea [ Camellia sinensis (L.) O. Kuntze] is mainly grown in low‐ to middle‐income countries (LMIC) and is a global commodity. Breeding programs in these countries face the challenge of increasing genetic gain because the accuracy of selecti…
View article: Genomic selection for genotype performance and stability using information on multiple traits and multiple environments
Genomic selection for genotype performance and stability using information on multiple traits and multiple environments Open
View article: Genomic selection strategies to increase genetic gain in tea breeding programs
Genomic selection strategies to increase genetic gain in tea breeding programs Open
Earth and Space Science Open Archive This preprint has been submitted to and is under consideration at The Plant Genome. ESSOAr is a venue for early communication or feedback before peer review. Data may be preliminary.Learn more about pre…
View article: Breeding strategies for integrating new and orphan crops in production systems
Breeding strategies for integrating new and orphan crops in production systems Open
25/11/2021 Author: Jon Bancic Contact: [email protected] Dataset consists of R scripts and datasets used for the analysis in Chapter 2, 3, 4 of my thesis. Each research chapter has its own directory and contains: • code folder: includes…
View article: Genomic and phenotypic characterization of finger millet indicates a complex diversification history
Genomic and phenotypic characterization of finger millet indicates a complex diversification history Open
Advances in sequencing technologies mean that insights into crop diversification aiding future breeding can now be explored in crops beyond major staples. For the first time, we use a genome assembly of finger millet, an allotetraploid orp…
View article: Modeling Illustrates That Genomic Selection Provides New Opportunities for Intercrop Breeding
Modeling Illustrates That Genomic Selection Provides New Opportunities for Intercrop Breeding Open
Intercrop breeding programs using genomic selection can produce faster genetic gain than intercrop breeding programs using phenotypic selection. Intercropping is an agricultural practice in which two or more component crops are grown toget…
View article: Modelling illustrates that genomic selection provides new opportunities for intercrop breeding
Modelling illustrates that genomic selection provides new opportunities for intercrop breeding Open
Intercrop breeding programs using genomic selection can produce faster genetic gain than intercrop breeding programs using phenotypic selection. Intercropping is an agricultural practice in which two or more component crops are grown toget…
View article: The role of genetics in mainstreaming the production of new and orphan crops to diversify food systems and support human nutrition
The role of genetics in mainstreaming the production of new and orphan crops to diversify food systems and support human nutrition Open
Summary Especially in low‐income nations, new and orphan crops provide important opportunities to improve diet quality and the sustainability of food production, being rich in nutrients, capable of fitting into multiple niches in productio…
View article: Resistance against Dickeya solani in potato with the help of a susceptibility gene
Resistance against Dickeya solani in potato with the help of a susceptibility gene Open
Potato (Solanum tuberosum) is a staple crop across Europe, including Sweden. Among the reasons why it is so ubiquitous is its fairly easy cultivation, good adaptability to various climates, and high nutritional value. Today’s potato produc…