Explanipedia

Fluid Volume Assignment for Flow-Based Biochips: State-of-the-Art and Research Challenges Open

Alexander Schneider, Jan Madsen, Paul Pop · 2025

Microfluidic biochips are replacing the conventional biochemical analysers integrating the necessary functions on-chip. We are interested in Flow-Based Microfluidic Biochips (FBMB), where a continuous flow of liquid is manipulated using in…

Antifouling slippery liquid infused porous surface for surfactant-free PCR on digital microfluidics platform Open

Neeti Kalyani, Marc Cernuda Pastor, Luca Pezzarossa, Iben Møller‐Hansen, Georgi Tanev , et al. · 2024

Digital microfluidics technology has immense potential for multiplexing biological processes, reducing reagents, and minimizing process time. However, biofouling of surfaces causes cross-contamination, slow droplet movement, and prolonged …

teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering Open

Søren D. Petersen, Lucas Levassor, Christine M. Pedersen, Jan Madsen, Lea G. Hansen , et al. · 2024

Synthetic biology dictates the data-driven engineering of biocatalysis, cellular functions, and organism behavior. Integral to synthetic biology is the aspiration to efficiently find, access, interoperate, and reuse high-quality data on ge…

Antifouling Slippery Liquid Infused Porous Surface for Surfactant-Free Pcr on Digital Microfluidics Platform Open

Neeti Kalyani, Marc Cernuda Pastor, Luca Pezzarossa, Iben Møller‐Hansen, Georgi Tanev , et al. · 2024

A Holistic Review of the TinyML Stack for Predictive Maintenance Open

Emil Njor, Mohammad Amin Hasanpour, Jan Madsen, Xenofon Fafoutis · 2024

Downtime caused by failing equipment can be extremely costly for organizations. Predictive Maintenance (PdM), which uses data to predict when maintenance should be conducted, is an essential tool for increasing safety, maximizing uptime an…

Computer Engineering Education Open

Marilyn Wolf, Jan Madsen · 2023

The global semiconductor renaissance gives impetus to an examination of computer engineering curricula. Computer engineering encompasses hardware and software aspects of computer system design, often with an application-driven focus.

Literate programming for iterative design-build-test-learn cycles in bioengineering Open

Søren Dahl Petersen, Lucas Levassor, Christine M. Pedersen, Jan Madsen, Lea G. Hansen , et al. · 2023

Synthetic biology dictates the data-driven engineering of biocatalysis, cellular functions, and organism behavior. Integral to synthetic biology is the aspiration to efficiently find, access, interoperate, and reuse high-quality data on ge…

Data Aware Neural Architecture Search Open

Emil Njor, Jan Madsen, Xenofon Fafoutis · 2023

Neural Architecture Search (NAS) is a popular tool for automatically generating Neural Network (NN) architectures. In early NAS works, these tools typically optimized NN architectures for a single metric, such as accuracy. However, in the …

Antifouling Slippery Liquid Infused Porous Surface for Surfactant-Free Pcr on Digital Microfluidics Platform Open

Winnie Edith Svendsen, Neeti Kalyani, Marc Cernuda Pastor, Luca Pezzarossa, Iben Møller‐Hansen , et al. · 2023

Antifouling Slippery Liquid Infused Porous Surface for Surfactant-Free Pcr on Digital Microfluidics Platform Open

Neeti Kalyani, Marc Cernuda Pastor, Luca Pezzarossa, Iben Møller‐Hansen, Maria Dimaki , et al. · 2023

PCR Purification using Digital Microfluidics Open

Neeti Kalyani, Marc Cernuda Pastor, Georgi Tanev, Luca Pezzarosa, Iben Møller‐Hansen , et al. · 2023

BiowareCFP: An Application-Agnostic Modular Reconfigurable Cyber-Fluidic Platform Open

Georgi Tanev, Winnie Edith Svendsen, Jan Madsen · 2022

Microfluidic biochips have been in the scientific spotlight for over two decades, and although technologically advanced, they still struggle to deliver on the promise for ubiquitous miniaturization and automation for the biomedical sector.…

A Primer for tinyML Predictive Maintenance: Input and Model Optimisation Open

Emil Njor, Jan Madsen, Xenofon Fafoutis · 2022

Affordable Fabrication of Conductive Electrodes and Dielectric Films for a Paper-Based Digital Microfluidic Chip Open

Veasna Soum, Yunpyo Kim, Sooyong Park, Mary Chuong, Soo Ryeon Ryu , et al. · 2019

In order to fabricate a digital microfluidic (DMF) chip, which requires a patterned array of electrodes coated with a dielectric film, we explored two simple methods: Ballpoint pen printing to generate the electrodes, and wrapping of a die…

Bioøkonomiens maskinrum.: DTU Sektorudviklingsrapport Open

Simon Bolwig, Anne Nygaard Tanner, Lene Lange, Anders Pall Skött, Jesper Ahrenfeldt , et al. · 2019

Verdens ressourcer er begrænsede. Vi er nødt til at tænke nyt, hvis vi skal kunne brødføde verdens voksende befolkning, imødegå de stigende klimaudfordringer og opretholde vores levestandard. For at takle disse udfordringer skal vi finde n…

Report on DATE 2018 in Dresden, Germany Open

Jan Madsen, Ayse K. Coskun · 2018

The Design, Automation, and Test in Europe (DATE) 2018 received a total of 766 paper submissions, out of which 39% were from authors in Europe, 26% of the submissions were from America, 34% from Asia, and 1% from the rest of the world. Thi…

Paper-based sensors for rapid detection of virulence factor produced by Pseudomonas aeruginosa Open

Fatima AlZahra’a Alatraktchi, Jafar Safaa Noori, Georgi Tanev, John Mortensen, Maria Dimaki , et al. · 2018

Pyocyanin is a toxin produced by Pseudomonas aeruginosa. Here we describe a novel paper-based electrochemical sensor for pyocyanin detection, manufactured with a simple and inexpensive approach based on electrode printing on paper. The res…

System-Level Sensitivity Analysis of SiNW-bioFET-Based Biosensing Using Lock-In Amplification Open

François Patou, Maria Dimaki, Claus Kjargaard, Jan Madsen, Winnie Edith Svendsen · 2017

Although Silicon Nanowire biological Field-Effect Transistors (SiNW-bioFETs) have steadily demonstrated their ability to detect biological markers at ultra-low concentration, they have not yet translated into routine diagnostics applicatio…

Distributed Co-Simulation of Embedded Control Software with Exhaust Gas Recirculation Water Handling System using INTO-CPS Open

Nicolai Pedersen, Kenneth Lausdahl, Enrique Vidal Sánchez, Peter Gorm Larsen, Jan Madsen · 2017

Engineering complex Cyber-Physical Systems, such as emission reduction control systems for large two-stroke engines, require advanced modelling of both the cyber and physical aspects. Different tools are specialised for each of these domai…

Distributed Co-Simulation of Embedded Control Software with Exhaust Gas Recirculation Water Handling System using INTO-CPS Open

Nicolai Pedersen, Kenneth Lausdahl, Enrique Vidal Sánchez, Peter Gorm Larsen, Jan Madsen · 2017

A Top-down Approach to Genetic Circuit Synthesis and Optimized Technology Mapping Open

Hasan Baig, Jan Madsen · 2017

Genetic logic circuits are becoming popular as an emerging field of technology. They are composed of genetic parts of DNA and work inside a living cell to perform a dedicated boolean function triggered by the presence or absence of certain…

Helbredstjek af dansk sundhedsteknologi: Sektorudviklingsrapport Open

Niels Axel Nielsen, Jakob E. Bardram, Jan Madsen, John Bagterp Jørgensen, Mark Bernhard Riis , et al. · 2017

Sådan kan samarbejde mellem industrien, universiteterne og sundhedsvæsenet skabe gode løsninger til forebyggelse, diagnostik, patientbehandling og rehabilitering

When Embedded Systems Meet Life Sciences: Microfluidic Biochips For Real-Time Healthcare Open

Mirela Alistar, Jan Madsen, Tsung-Yi Ho, Robert Wille · 2016

Biochips are cyber-physical system with realistic potential to improve the healthcare process, e.g., by providing faster disease diagnosis and at-home direct treatment. We review the area of biochips on its way to becoming a strong researc…

D-VASim: an interactive virtual laboratory environment for the simulation and analysis of genetic circuits Open

Hasan Baig, Jan Madsen · 2016

Summary Simulation and behavioral analysis of genetic circuits is a standard approach of functional verification prior to their physical implementation. Many software tools have been developed to perform in silico analysis for this purpose…

Evolvable Smartphone-Based Platforms for Point-of-Care In-Vitro Diagnostics Applications Open

François Patou, Fatima AlZahra’a Alatraktchi, Claus Kjægaard, Maria Dimaki, Jan Madsen , et al. · 2016

The association of smart mobile devices and lab-on-chip technologies offers unprecedented opportunities for the emergence of direct-to-consumer in vitro medical diagnostics applications. Despite their clear transformative potential, obstac…

FMI for Co-Simulation of Embedded Control Software Open

Nicolai Pedersen, Tom Bojsen, Jan Madsen, Morten Vejlgaard-Laursen · 2016

Increased complexity of cyber-physical systems within the maritime industry demands closer cooperation between engineering disciplines.The functional mockup interface (FMI) is an initiative aiding cross-discipline interaction by providing,…

Timing Analysis of Genetic Logic Circuits using D-VASim Open

Hasan Baig, Jan Madsen · 2016

Logic and Timing Analysis of Genetic Logic Circuits using D-VASim Open

Hasan Baig, Jan Madsen · 2016

D-VASim: A Software Tool to Simulate and Analyze Genetic Logic Circuits Open

Hasan Baig, Jan Madsen · 2016

D-VASim: Dynamic Virtual Analyzer and Simulator for Genetic Circuits Open

Hasan Baig, Jan Madsen · 2015

A genetic circuit represents a gene regulator network that is triggered by a combination of external signals, such as chemicals, proteins, light or temperature, to emit signals to control gene expression or metabolic pathways accordingly. …

Jan Madsen YOU? Author Swipe