Judith Risse
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View article: Independent Avian Epigenetic Clocks for Ageing and Development
Independent Avian Epigenetic Clocks for Ageing and Development Open
Information on individual age is a fundamental aspect in many ecological and evolutionary studies. However, accurate and non‐lethal methods that can be applied to estimate the age of wild animals are often absent. Furthermore, since the pr…
View article: Independent avian epigenetic clocks for aging and development
Independent avian epigenetic clocks for aging and development Open
Information on individual age is a fundamental aspect in many ecological and evolutionary studies. However, accurate and non-lethal methods that can be applied to estimate the age of wild animals are often absent. Furthermore, since the pr…
View article: Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome sequences from dandelion (Taraxacum officinale)
Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome sequences from dandelion (Taraxacum officinale) Open
The Asteraceae is the largest angiosperm family with more than 25,000 species. Individual studies have shown that MADS-box and TCP transcription factors are regulators of the development and symmetry of flowers, contributing to their iconi…
View article: Genetic mechanisms underlying increased microalgal thermotolerance, maximal growth rate, and yield on light following adaptive laboratory evolution
Genetic mechanisms underlying increased microalgal thermotolerance, maximal growth rate, and yield on light following adaptive laboratory evolution Open
Background Adaptive laboratory evolution (ALE) is a powerful method for strain optimization towards abiotic stress factors and for identifying adaptation mechanisms. In this study, the green microalga Picochlorum sp. BPE23 was cultured und…
View article: Transcriptional regulation underlying the temperature response of embryonic development rate in the winter moth
Transcriptional regulation underlying the temperature response of embryonic development rate in the winter moth Open
Climate change will strongly affect the developmental timing of insects, as their development rate depends largely on ambient temperature. However, we know little about the genetic mechanisms underlying the temperature sensitivity of embry…
View article: Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild
Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild Open
Evolutionary adaptation is generally thought to occur through incremental mutational steps, but large mutational leaps can occur during its early stages. These are challenging to study in nature due to the difficulty of observing new genet…
View article: all_consensus_snp_PvsG_informative.vcf
all_consensus_snp_PvsG_informative.vcf Open
SNPS from RAD sequencing in populations sample
View article: The genetic underpinnings of bill length variation in great tits (Parus major)
The genetic underpinnings of bill length variation in great tits (Parus major) Open
Bird bills vary greatly in shape, size, and colour, both within and between species. Various studies have shown that bill length and shape is a true polygenic trait, with up to 100 different genes implicated. In great tits (Parus major) bi…
View article: Analysis.txt
Analysis.txt Open
files that describes the analysis of the RAD data
View article: all_consensus_assembly.fa
all_consensus_assembly.fa Open
FASTA sequence of Lepidium Campestre using RAD sequencing
View article: all_consensus_snp_P1_P2_informative.vcf
all_consensus_snp_P1_P2_informative.vcf Open
RAD sequencing of Lepidium campestre, informative SNP between parents of cross.
View article: all_consensus_snp_P1_P2_informative.vcf
all_consensus_snp_P1_P2_informative.vcf Open
RAD sequencing of Lepidium campestre, informative SNP between parents of cross.
View article: Silent crickets reveal the genomic footprint of recent adaptive trait loss
Silent crickets reveal the genomic footprint of recent adaptive trait loss Open
Secondary trait loss is widespread and has profound consequences, from generating diversity to driving adaptation. Sexual trait loss is particularly common. Its genomic impact is challenging to reconstruct because most reversals occurred i…
View article: poreTally: run and publish <i>de novo</i> Nanopore assembler benchmarks
poreTally: run and publish <i>de novo</i> Nanopore assembler benchmarks Open
Nanopore sequencing is a novel approach to nucleic acid analysis that generates long, error-prone reads. Since device components, base calling software and best practices for sample preparation are updated frequently and extensively, the n…
View article: Opposing patterns of intraspecific and interspecific differentiation in sex chromosomes and autosomes
Opposing patterns of intraspecific and interspecific differentiation in sex chromosomes and autosomes Open
Linking intraspecific and interspecific divergence is an important challenge in speciation research. X chromosomes are expected to evolve faster than autosomes and disproportionately contribute to reproductive barriers, and comparing genet…
View article: The long reads ahead: de novo genome assembly using the MinION
The long reads ahead: de novo genome assembly using the MinION Open
Nanopore technology provides a novel approach to DNA sequencing that yields long, label-free reads of constant quality. The first commercial implementation of this approach, the MinION, has shown promise in various sequencing applications…
View article: A sequencer coming of age: De novo genome assembly using MinION reads
A sequencer coming of age: De novo genome assembly using MinION reads Open
Nanopore technology provides a novel approach to DNA sequencing that yields long, label-free reads of constant quality. The first commercial implementation of this approach, the MinION, has shown promise in various sequencing applications.…
View article: A sequencer coming of age:<i>de novo</i>genome assembly using MinION reads
A sequencer coming of age:<i>de novo</i>genome assembly using MinION reads Open
Nanopore technology provides a novel approach to DNA sequencing that yields long, label-free reads of constant quality. The first commercial implementation of this approach, the MinION, has shown promise in various sequencing applications.…
View article: Genomic Signatures of Historical Allopatry and Ecological Divergence in an Island Lizard
Genomic Signatures of Historical Allopatry and Ecological Divergence in an Island Lizard Open
Geographical variation among contiguous populations is frequently attributed to ecological divergence or historical isolation followed by secondary contact. Distinguishing between these effects is key to studies of incipient speciation and…
View article: A single chromosome assembly of <i>Bacteroides fragilis</i> strain BE1 from Illumina and MinION nanopore sequencing data
A single chromosome assembly of <i>Bacteroides fragilis</i> strain BE1 from Illumina and MinION nanopore sequencing data Open
Background Second and third generation sequencing technologies have revolutionised bacterial genomics. Short-read Illumina reads result in cheap but fragmented assemblies, whereas longer reads are more expensive but result in more complete…
View article: A supergene determines highly divergent male reproductive morphs in the ruff
A supergene determines highly divergent male reproductive morphs in the ruff Open
Three strikingly different alternative male mating morphs (aggressive 'independents', semicooperative 'satellites' and female-mimic 'faeders') coexist as a balanced polymorphism in the ruff, Philomachus pugnax, a lek-breeding wading bird. …
View article: A single chromosome assembly of<i>Bacteroides fragilis</i>strain BE1 from Illumina and MinION nanopore sequencing data
A single chromosome assembly of<i>Bacteroides fragilis</i>strain BE1 from Illumina and MinION nanopore sequencing data Open
Background Second and third generation sequencing technologies have revolutionised bacterial genomics. Short-read Illumina reads result in cheap but fragmented assemblies, whereas longer reads are more expensive but result in more complete…