Juge Liu
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View article: The Comprehensive Detection of mRNAs, lncRNAs, circRNAs, and miRNAs in Lychee Response to Lychee Downy Blight
The Comprehensive Detection of mRNAs, lncRNAs, circRNAs, and miRNAs in Lychee Response to Lychee Downy Blight Open
Lychee downy blight (LDB) is an oomycete pathogen (Peronophythora litchi) disease, which affects the fruits and leaves of lychee, resulting in economic losses. Chemical fungicides are commonly used for disease control, while for eco-safety…
View article: Response of Rice Yield and Grain Quality to Combined Nitrogen Application Rate and Planting Density in Saline Area
Response of Rice Yield and Grain Quality to Combined Nitrogen Application Rate and Planting Density in Saline Area Open
To determine the combining effects of nitrogen application rate and planting density on rice yield and grain quality formation under salinity conditions, a field experiment was conducted in the coastal saline area using Oryza sativa L. cv.…
View article: Development of active packaging films based on quaternary ammonium chitosan, polyvinyl alcohol and litchi (Litchi chinensis Sonn.) pericarp extract
Development of active packaging films based on quaternary ammonium chitosan, polyvinyl alcohol and litchi (Litchi chinensis Sonn.) pericarp extract Open
Litchi (Litchi chinensis Sonn.) pericarp contains abundant polyphenols that are suitable materials for developing active packaging films. In this study, 1 wt%, 3 wt% and 5 wt% of litchi pericarp extract (LPE) was added into quaternary ammo…
View article: Comparative Analyses Reveal Peroxidases Play Important Roles in Soybean Tolerance to Aluminum Toxicity
Comparative Analyses Reveal Peroxidases Play Important Roles in Soybean Tolerance to Aluminum Toxicity Open
Aluminum (Al) toxicity is an important barrier to soybean (Glycine max (L.) Merr.) production in acid soils. However, little is known about the genes underlying Al tolerance in soybean. We aim to find the key candidate genes and investigat…
View article: Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity
Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity Open
Aluminum (Al) toxicity is a major factor limiting crop productivity on acid soils. Soybean (Glycine max) is an important oil crop and there is great variation in Al tolerance in soybean germplasms. However, only a few Al-tolerance genes ha…
View article: Additional file 10: Table S5. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 10: Table S5. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Detailed information of putative co-functional genes of GmALDHs. (XLSX 92 kb)
View article: Additional file 1: Table S1. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 1: Table S1. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Soybean ALDH genes and their encoded proteins. (XLSX 15 kb)
View article: Additional file 2: Table S2. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 2: Table S2. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Identification of PF00171, PS00687 and PS00070 domains in soybean ALDHs using HMMER 3.0 software. (XLSX 13 kb)
View article: Additional file 13: Table S7. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 13: Table S7. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
FPKM values of GmALDH genes in the drought-tolerant soybean variety PI416937 under control and drought stress conditions. (XLSX 14 kb)
View article: Additional file 17: Table S10. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 17: Table S10. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Identity and similarity values of GmALDH proteins compared to each other and to ALDHs from Arabidopsis and three other ALDH proteins. (XLSX 39 kb)
View article: Additional file 20: Table S11. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 20: Table S11. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
The primer sequences and amplification efficiencies for qRT-PCR in this study. (XLSX 10 kb)
View article: Additional file 4: Table S3. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 4: Table S3. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Multiple alignments of ALDH protein sequences from P. vulgaris (Pv), M. truncatula (Mt), A. thaliana (At), and O. sativa (Os). (XLSX 36 kb)
View article: Additional file 14: Table S8. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 14: Table S8. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Fold change and p-value of GmALDH genes in the drought-tolerant soybean variety PI416937 under drought stress compared with control. (XLSX 13 kb)
View article: Additional file 16: Table S9. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 16: Table S9. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Hormone- and stress-responsive cis-elements present in the 1500Â bp upstream region of the 53 GmALDH genes. (XLSX 27 kb)
View article: Additional file 8: Table S4. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 8: Table S4. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
Estimated time of the WGD/segmental duplication events among soybean GmALDH genes. (XLSX 13 kb)
View article: Additional file 12: Table S6. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response
Additional file 12: Table S6. of Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response Open
FPKM values of GmALDH genes in eight different tissues of soybean. Values obtained from Phytozome v11.0. (XLSX 15 kb)
View article: Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq
Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq Open
Soil alkalinity is a major abiotic constraint to crop productivity and quality. Wild soybean (Glycine soja) is considered to be more stress-tolerant than cultivated soybean (G. max), and has considerable genetic variation for increasing al…
View article: Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
A total of 117 MATE transporters were identified in soybean and their potential functions were proposed by phylogenetic analysis with known plant MATE transporters. The cis-elements and expression patterns of eight soybean MATE genes relat…
View article: Additional file 7: Table S6. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 7: Table S6. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
RNA-seq data of 117 soybean MATE genes in 14 tissues as shown in reads/kilobase/million (RPKM) normalization of the raw data from RNA-Seq Atlas on SoyBase. (XLS 44 kb)
View article: Additional file 13: Table S9. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 13: Table S9. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
The Ct values of the housekeeping gene GmEF-1Îą by qRT-PCR across all samples in this study. (XLS 32 kb)
View article: Additional file 11: Table S8. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 11: Table S8. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
Primers and amplification efficiencies for qRT-PCR and RT-PCR in this study. (XLS 22 kb)
View article: Additional file 5: Table S4. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 5: Table S4. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
The 35 known MATE transporters in plants. (XLS 51 kb)
View article: Additional file 3: Table S2. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 3: Table S2. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
Details of the 117 MATE proteins in soybean. (XLS 42 kb)
View article: Additional file 1: Table S1. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 1: Table S1. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
The nomenclature and physical locations of 117 soybean MATE genes. (XLS 39 kb)
View article: Additional file 4: Table S3. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 4: Table S3. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
Duplication analysis of the 117 Soybean MATE genes. (XLS 29 kb)
View article: Additional file 8: of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 8: of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
The 1500Â bp upstream sequences of the eight soybean C4-3 MATE genes. (DOC 43 kb)
View article: Additional file 6: Table S5. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean
Additional file 6: Table S5. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean Open
RNA-seq data of 117 soybean MATE genes in nine tissues as shown in fragments/kilobase/million (FPKM) from Phytozome. (XLS 43 kb)