Juliann Shih
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View article: Cancer aneuploidies are shaped primarily by effects on tumour fitness
Cancer aneuploidies are shaped primarily by effects on tumour fitness Open
View article: Table S6 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S6 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S6 contains results from the analysis of DNA methylation in SETD2 mutated and BAP1 inactivated samples.
View article: Supplementary Table 2 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Supplementary Table 2 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
Table S2: Oligos used in the study
View article: Table S7 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S7 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S7 contains microbe screening results.
View article: Supplementary Figures from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Supplementary Figures from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
Figure S1. Super-enhancers near the KLF5 gene are focally amplified in cancer cell lines;Figure S2. The regulatory potential of the KLF5/KLF12 intervening region;Figure S3. Expression level of KLF12, DIS3 and PIBF1 after repression of KLF5…
View article: Supplementary Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Supplementary Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Supplementary materials and methods, as well as supplementary figures S1-S7.
View article: Supplementary Table 1 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Supplementary Table 1 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
Table S1: KLF5 E419Q-gained super-enhancers and the nearest genes
View article: Table S1 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S1 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S1 contains cohort description, Master Patient Table and MutSigCV results.
View article: Table S4 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S4 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S4 includes immune signature and iCluster results.
View article: Table S2 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S2 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S2 contains BAP1 analysis results, as well as detailed lists of YY1 and IRF8 target genes.
View article: Table S5 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S5 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S5 contains detailed miRs and lncRNAs results.
View article: Table S3 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S3 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S3 contains the karyotypes of 16 genome-wide LOH MPM cases from the BWH cohort.
View article: Supplementary Figures from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Supplementary Figures from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
Figure S1. Super-enhancers near the KLF5 gene are focally amplified in cancer cell lines;Figure S2. The regulatory potential of the KLF5/KLF12 intervening region;Figure S3. Expression level of KLF12, DIS3 and PIBF1 after repression of KLF5…
View article: Data from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Data from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
The Krüppel-like family of transcription factors plays critical roles in human development and is associated with cancer pathogenesis. Krüppel-like factor 5 gene (KLF5) has been shown to promote cancer cell proliferation and tumorig…
View article: Table S3 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S3 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S3 contains the karyotypes of 16 genome-wide LOH MPM cases from the BWH cohort.
View article: Table S4 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S4 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S4 includes immune signature and iCluster results.
View article: Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Malignant pleural mesothelioma (MPM) is a highly lethal cancer of the lining of the chest cavity. To expand our understanding of MPM, we conducted a comprehensive integrated genomic study, including the most detailed analysis of BAP1
View article: Supplementary Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Supplementary Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Supplementary materials and methods, as well as supplementary figures S1-S7.
View article: Supplementary Table 1 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Supplementary Table 1 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
Table S1: KLF5 E419Q-gained super-enhancers and the nearest genes
View article: Table S5 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S5 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S5 contains detailed miRs and lncRNAs results.
View article: Data from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Data from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
The Krüppel-like family of transcription factors plays critical roles in human development and is associated with cancer pathogenesis. Krüppel-like factor 5 gene (KLF5) has been shown to promote cancer cell proliferation and tumorig…
View article: Table S7 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S7 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S7 contains microbe screening results.
View article: Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Data from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Malignant pleural mesothelioma (MPM) is a highly lethal cancer of the lining of the chest cavity. To expand our understanding of MPM, we conducted a comprehensive integrated genomic study, including the most detailed analysis of BAP1
View article: Table S2 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S2 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S2 contains BAP1 analysis results, as well as detailed lists of YY1 and IRF8 target genes.
View article: Supplementary Table 2 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor
Supplementary Table 2 from Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor Open
Table S2: Oligos used in the study
View article: Table S6 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S6 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S6 contains results from the analysis of DNA methylation in SETD2 mutated and BAP1 inactivated samples.
View article: Table S1 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma
Table S1 from Integrative Molecular Characterization of Malignant Pleural Mesothelioma Open
Table S1 contains cohort description, Master Patient Table and MutSigCV results.
View article: Data from Genomic Activation of <i>PPARG</i> Reveals a Candidate Therapeutic Axis in Bladder Cancer
Data from Genomic Activation of <i>PPARG</i> Reveals a Candidate Therapeutic Axis in Bladder Cancer Open
The PPARG gene encoding the nuclear receptor PPARγ is activated in bladder cancer, either directly by gene amplification or mutation, or indirectly by mutation of the RXRA gene, which encodes the heterodimeric partner of PPAR…
View article: Combined Supplementary Information from Genomic Activation of <i>PPARG</i> Reveals a Candidate Therapeutic Axis in Bladder Cancer
Combined Supplementary Information from Genomic Activation of <i>PPARG</i> Reveals a Candidate Therapeutic Axis in Bladder Cancer Open
Supplementary Methods. Supplementary Figure 1. Somatic alterations in PPARG and RXRA are hallmarks of luminal bladder cancer. Supplementary Figure 2. PPARG pathway is activated by overexpression of RXRA S427F/S427Y, but not other mutant al…
View article: Supplementary Table 1 from Genomic Activation of <i>PPARG</i> Reveals a Candidate Therapeutic Axis in Bladder Cancer
Supplementary Table 1 from Genomic Activation of <i>PPARG</i> Reveals a Candidate Therapeutic Axis in Bladder Cancer Open
Chemical structures of compounds used in study