Explanipedia

Genetic dissection of two elite japonica varieties reveals founder transmission and selection in breeding Open

Junhua Ye, Ying Yan, Lixia Zhang, Kai Wang, Hang Yang , et al. · 2025

Understanding the genetic basis of elite rice varieties is conducive to the strategic utilization of genetic resources in modern breeding programs. To elucidate the genetic component and transmission across pedigrees, we investigated two e…

Surgical Strategy Analysis of Chiari Malformation With or Without Type II Basilar Invagination According to the Morphological Types of the Atlanto-Occipital Joint: A Retrospective Study of 212 Patients Open

Qinguo Huang, Junhua Ye, Yanyu Wu, Qiang Zhou, Hong Li , et al. · 2025

Objective: Our previous study categorized atlanto-occipital joint (AOJ) morphology into 3 types, with types II and III-AOJ associated with Chiari malformation (CM) with and without type II basilar invagination (II-BI), respectively. This s…

Improving panicle blast resistance and fragrance in a high-quality japonica rice variety through breeding Open

Junhua Ye, Kai Wang, Y. F. Wang, Zhipeng Zhao, Ying Yan , et al. · 2025

Introduction Huruan1212 (HR1212) is well-regarded for its superior eating and cooking quality in the lower reaches of the Yangtze River in China. Still, its high susceptibility to rice panicle blast and lack of fragrance have limited its f…

Comparisons of Appearance and Eating Quality Traits Between Early and Late Maturing Soft Rice Open

Lixia Zhang, Kai Wang, Yi Wang, Ying Yan, Zejun Hu , et al. · 2024

Soft Japonica rice is popular in Yangtze River Delta of China in recent years because of its high eating quality. In this study, high eating quality soft Japonica rice with early and late maturity was used to analyze their eating quality t…

<i>BTA2</i> regulates tiller angle and the shoot gravity response through controlling auxin content and distribution in rice Open

Zhen Li, Junhua Ye, Qiaoling Yuan, Mengchen Zhang, X. Wang , et al. · 2024

Tiller angle is a key agricultural trait that establishes plant architecture, which in turn strongly affects grain yield by influencing planting density in rice. The shoot gravity response plays a crucial role in the regulation of tiller a…

Identification of the BTA8 gene reveals the contribution of natural variation to tiller angle in rice Open

Junrong Liu, Xingyu Wang, Jing Wang, Junhua Ye, Mengchen Zhang , et al. · 2024

Unveiling the Genetic Basis Underlying Rice Anther Culturability via Segregation Distortion Analysis in Doubled Haploid Population Open

Bin Sun, Xiaorui Ding, Junhua Ye, Yuting Dai, Can Cheng , et al. · 2023

Anther culture (AC) is a valuable technique in rice breeding. However, the genetic mechanisms underlying anther culturability remain elusive, which has hindered its widespread adoption in rice breeding programs. During AC, microspores carr…

Integrating genome-wide association study into genomic selection for the prediction of agronomic traits in rice (Oryza sativa L.) Open

Yuanyuan Zhang, Mengchen Zhang, Junhua Ye, Qun Xu, Feng Yue , et al. · 2023

Accurately identifying varieties with targeted agronomic traits was thought to contribute to genetic selection and accelerate rice breeding progress. Genomic selection (GS) is a promising technique that uses markers covering the whole geno…

Genomic selection analysis of morphological and adaptation traits in Chinese indigenous dog breeds Open

Yangfeng Li, Min Huang, Zhenjie Wang, Xueyuan Liu, Shan He , et al. · 2023

The significant morphological differences and abundant germplasm resources of Chinese indigenous dog breeds can be attributed to the diverse geographical environment, including plateaus, mountains, and a long history of raising dogs. The c…

LG5, a Novel Allele of EUI1, Regulates Grain Size and Flag Leaf Angle in Rice Open

Zhen Li, Junrong Liu, Xingyu Wang, Jing Wang, Junhua Ye , et al. · 2023

Grain size and flag leaf angle are two important traits that determining grain yield in rice. However, the mechanisms regulating these two traits remain largely unknown. In this study, a rice long grain 5 (lg5) mutant with a large flag lea…

Brittle culm 25, which encodes an UDP-xylose synthase, affects cell wall properties in rice Open

Siliang Xu, Mengchen Zhang, Junhua Ye, Dongxiu Hu, Yuanyuan Zhang , et al. · 2023

Because plant mechanical strength influences plant growth and development, the regulatory mechanisms underlying cell-wall synthesis deserve investigation. Rice mutants are useful for such research. We have identified a novel brittle culm 2…

Exploring the Pathogenesis of Atlanto-Occipital Instability in Chiari Malformation With Type II Basilar Invagination: A Systematic Morphological Study Open

Qinguo Huang, Xiaoyu Yang, Dongying Zheng, Qiang Zhou, Hong Li , et al. · 2022

BACKGROUND: Our previous study suggested that atlanto-occipital instability (AOI) is common in patients with type II basilar invagination (II-BI). OBJECTIVE: To further understand the pathogenesis of AOI in Chiari malformations (CM) and CM…

Gene prediction of aging-related diseases based on DNN and Mashup Open

Junhua Ye, Shunfang Wang, Xin Yang, Xianjun Tang · 2021

Background At present, the bioinformatics research on the relationship between aging-related diseases and genes is mainly through the establishment of a machine learning multi-label model to classify each gene. Most of the existing methods…

Additional file 1 of Gene prediction of aging-related diseases based on DNN and Mashup Open

Junhua Ye, Shunfang Wang, Xin Yang, Xianjun Tang · 2021

Additional file 1: Details of predicted genes.

Genome-Wide Association Study of Rice Rooting Ability at the Seedling Stage Open

Xin Xu, Junhua Ye, Yingying Yang, Mengchen Zhang, Qun Xu , et al. · 2020

Genome-wide association study of rice rooting ability at the seedling stage Open

Xin Xu, Junhua Ye, Yingying Yang, Mengchen Zhang, Qun Xu , et al. · 2020

BackgroundRice rooting ability is a complex agronomical trait that displays heterosis and plays an important role in rice growth and production. Only a few quantitative trait loci (QTLs) have been identified by bi-parental population. More…

Determination of minimum number of random SNP for accurate population classification in rice (Oryza sativa L.) Open

Shan Wang, Junhua Ye, Qun Xu, Xin Xu, Yingying Yang , et al. · 2020

Background: Classification of germplasm collections is of great importance for both the conservation and utilization of genetic resources. Thus, it is necessary to estimate and classify rice varieties in order to utilize these germplasms m…

Genome-Wide Association Study of Rice Rooting Ability at the Seedling Stage Open

Xin Xu, Junhua Ye, Yingying Yang, Mengchen Zhang, Qun Xu , et al. · 2020

Background Rice rooting ability is a complex agronomical trait that displays heterosis and plays an important role in rice growth and production. Only a few quantitative trait loci (QTLs) have been identified by bi-parental population. Mor…

Additional file 2 of Genome-Wide Association Study of Rice Rooting Ability at the Seedling Stage Open

Xin Xu, Junhua Ye, Yingying Yang, Mengchen Zhang, Qun Xu , et al. · 2020

Additional file 2: Table S1. Summary of 145 rice accessions and their phenotypic traits related to root growth ability. Table S2. Significant loci detected in the full population. Table S3. Significant loci detected in the indica populatio…

Genetic Diversity and Signatures of Selection in 15 Chinese Indigenous Dog Breeds Revealed by Genome-Wide SNPs Open

Qianyong Yang, Hao Chen, Junhua Ye, Chenlong Liu, Rongxing Wei , et al. · 2019

There are dozens of recognized indigenous dog breeds in China. However, these breeds have not had extensive studies to describe their population structure, genomic linkage disequilibrium (LD) patterns, and selection signatures. Here, we sy…

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