Junji Su
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View article: Genome-Wide Identification of DnaJ Gene Family and VIGS Analysis Reveal the Function of GhDnaJ316 in Floral Development for Upland Cotton
Genome-Wide Identification of DnaJ Gene Family and VIGS Analysis Reveal the Function of GhDnaJ316 in Floral Development for Upland Cotton Open
DnaJ proteins are established regulators of multiple physiological processes in plants, but their systematic identification and functional characterization in cotton remains largely uncharacterized, particularly regarding their roles in fl…
View article: Analyses of gene families, allelic variation and VIGS reveal that GheIF3M.2 is significantly associated with dwarfism in upland cotton
Analyses of gene families, allelic variation and VIGS reveal that GheIF3M.2 is significantly associated with dwarfism in upland cotton Open
Eukaryotic translation initiation factor 3 (eIF3), the largest eukaryotic initiation factor, regulates mRNA translation initiation. While eIF3 has been extensively studied in various plant species, research on eIF3 in upland cotton remains…
View article: Comprehensive evolutionary, differential expression and VIGS analyses reveal the function of GhNST1 in regulating drought tolerance and early maturity in upland cotton
Comprehensive evolutionary, differential expression and VIGS analyses reveal the function of GhNST1 in regulating drought tolerance and early maturity in upland cotton Open
NAC secondary wall thickening promoting factor 1 (NST1) is crucial for abiotic stress responses and plant growth and development. However, the studying of the function of GhNST1 in upland cotton is rather limited. Our study revealed that i…
View article: Identification of Elite Alleles and Candidate Genes for the Cotton Boll Opening Rate via a Genome-Wide Association Study
Identification of Elite Alleles and Candidate Genes for the Cotton Boll Opening Rate via a Genome-Wide Association Study Open
The boll opening rate (BOR) is an early maturity trait that plays a crucial role in cotton production in China, as BOR has a significant effect on defoliant spraying and picking time of unginned cotton, ultimately determining yield and fib…
View article: Silencing of GhSHP1 hindered flowering and boll cracking in upland cotton
Silencing of GhSHP1 hindered flowering and boll cracking in upland cotton Open
The opening of cotton bolls is an important characteristic that influences the precocity of cotton. In the field, farmers often use chemical defoliants to induce cotton leaves to fall off earlier, thus accelerating the cracking of cotton b…
View article: GhASHH1.A and GhASHH2.A Improve Tolerance to High and Low Temperatures and Accelerate the Flowering Response to Temperature in Upland Cotton (Gossypium hirsutum)
GhASHH1.A and GhASHH2.A Improve Tolerance to High and Low Temperatures and Accelerate the Flowering Response to Temperature in Upland Cotton (Gossypium hirsutum) Open
The trithorax group (TrxG) complex is an important protein in the regulation of plant histone methylation. The ABSENT, SMALL, OR HOMEOTIC DISCS 1 (ASH1) gene family, as important family members of the TrxG complex, has been shown to regula…
View article: H3K36 methyltransferase GhKMT3;1a and GhKMT3;2a promote flowering in upland cotton
H3K36 methyltransferase GhKMT3;1a and GhKMT3;2a promote flowering in upland cotton Open
A total of 86 SDG genes were identified in upland cotton, among which GhKMT3;1a and GhKMT3;2a might regulate flowering by affecting the expression of GhAP1, GhSOC1, GhFT and GhSVP. These findings will provide genetic resources for advanced…
View article: Integrating RTM-GWAS and meta‑QTLs uncovers the genomic regions and candidate genes for the first fruit branch node and its height in upland cotton
Integrating RTM-GWAS and meta‑QTLs uncovers the genomic regions and candidate genes for the first fruit branch node and its height in upland cotton Open
The first fruit branch node (FFBN) and height of the first fruit branch node (HFFBN) are two important traits related to plant architecture and early maturation in upland cotton. Several studies have been performed to elucidate the genetic…
View article: GhGASA14 regulates the flowering time of upland cotton in response to GA3
GhGASA14 regulates the flowering time of upland cotton in response to GA3 Open
The gibberellic acid-stimulated Arabidopsis (GASA), a gibberellin-regulated short amino acid family, has been extensively investigated in several plant species and found to be critical for plant growth and development. However, limited res…
View article: GhBRX.1, GhBRX.2, and GhBRX4.3 improve resistance to salt and cold stress in upland cotton
GhBRX.1, GhBRX.2, and GhBRX4.3 improve resistance to salt and cold stress in upland cotton Open
Introduction Abiotic stress during growth readily reduces cotton crop yield. The different survival tactics of plants include the activation of numerous stress response genes, such as BREVIS RADIX ( BRX ). Methods In this study, the BRX ge…
View article: Genome-Wide Identification of the GhANN Gene Family and Functional Validation of GhANN11 and GhANN4 under Abiotic Stress
Genome-Wide Identification of the GhANN Gene Family and Functional Validation of GhANN11 and GhANN4 under Abiotic Stress Open
Annexins (ANNs) are a structurally conserved protein family present in almost all plants. In the present study, 27 GhANNs were identified in cotton and were unevenly distributed across 14 chromosomes. Transcriptome data and RT-qPCR results…
View article: Knockdown of the atypical protein kinase genes GhABC1K2-A05 and GhABC1K12-A07 make cotton more sensitive to salt and PEG stress
Knockdown of the atypical protein kinase genes GhABC1K2-A05 and GhABC1K12-A07 make cotton more sensitive to salt and PEG stress Open
Activity of bc1 complex kinase (ABC1K) is an atypical protein kinase (aPK) that plays a crucial role in plant mitochondrial and plastid stress responses, but little is known about the responses of ABC1Ks to stress in cotton (Gossypium spp.…
View article: The Silencing of GhPIP5K2 and GhPIP5K22 Weakens Abiotic Stress Tolerance in Upland Cotton (Gossypium hirsutum)
The Silencing of GhPIP5K2 and GhPIP5K22 Weakens Abiotic Stress Tolerance in Upland Cotton (Gossypium hirsutum) Open
Phosphatidylinositol 4-phosphate 5-kinases (PIP5Ks), essential enzymes in the phosphatidylinositol signaling pathway, are crucial for the abiotic stress responses and the overall growth and development of plants. However, the GhPIP5Ks had …
View article: H3K36 methyltransferase GhKMT3;1a and GhKMT3;2a promote flowering in upland cotton
H3K36 methyltransferase GhKMT3;1a and GhKMT3;2a promote flowering in upland cotton Open
Background SET DOMAIN GROUP (SDG) proteins act as histone lysine methyltransferases, which play pivotal roles in a variety of developmental processes, such as flowering determination, by modifying chromatin structure to regulate related ge…
View article: Cotton RSG2 Mediates Plant Resistance against Verticillium dahliae by miR482b Regulation
Cotton RSG2 Mediates Plant Resistance against Verticillium dahliae by miR482b Regulation Open
Cotton Verticillium wilt, mainly caused by Verticillium dahliae, has a serious impact on the yield and quality of cotton fiber. Many microRNAs (miRNAs) have been identified to participate in plant resistance to V. dahliae infection, but th…
View article: Genome-wide investigation and expression profiles of the NPF gene family provide insight into the abiotic stress resistance of Gossypium hirsutum
Genome-wide investigation and expression profiles of the NPF gene family provide insight into the abiotic stress resistance of Gossypium hirsutum Open
Membrane transporters encoded by NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER ( NPF ) genes, which play crucial roles in plant growth, development and resistance to various stresses, are involved in the transport of nitrate (NO 3 - ) and pept…
View article: Nucleotide Evolution, Domestication Selection, and Genetic Relationships of Chloroplast Genomes in the Economically Important Crop Genus Gossypium
Nucleotide Evolution, Domestication Selection, and Genetic Relationships of Chloroplast Genomes in the Economically Important Crop Genus Gossypium Open
Gossypium hirsutum (upland cotton) is one of the most economically important crops worldwide, which has experienced the long terms of evolution and domestication process from wild species to cultivated accessions. However, nucleotide evolu…
View article: Additional file 2 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 2 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 2: Table S1. Phenotypic distribution range of three yield-related traits among 315 upland cotton accessions.
View article: Additional file 10 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 10 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 10: Table S9. The SNP loci associated with yield-related traits have been detected via GWAS method in upland cotton.
View article: Additional file 3 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 3 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 3: Table S2. The correlation analysis among three yield-related traits.
View article: Additional file 9 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 9 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 9: Table S8. The KEGG results of 16 potential candidate genes controlling target traits.
View article: Additional file 7 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 7 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 7: Table S6. Gene names expressed mainly in fibers or ovules of upland cotton by two RNA-seq data.
View article: Additional file 8 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 8 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 8: Table S7. The GO results of 16 potential candidate genes controlling target traits.
View article: Additional file 12 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 12 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 12: Table S11. The elastic GSC matrix and GSC eigenvectors.
View article: Additional file 11 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton
Additional file 11 of An RTM-GWAS procedure reveals the QTL alleles and candidate genes for three yield-related traits in upland cotton Open
Additional file 11: Table S10. Information of the 315 upland cotton accessions.