Jayantee Kalita
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View article: <i>GT-GRN</i> : a graph transformer framework for enhanced gene regulatory network inference via multimodal embedding of expression data and existing network knowledge
<i>GT-GRN</i> : a graph transformer framework for enhanced gene regulatory network inference via multimodal embedding of expression data and existing network knowledge Open
The inference of gene regulatory networks (GRNs) is critical for understanding the regulatory mechanisms underlying cellular development, functional specialization, and disease progression. Predicting regulatory gene interactions—often fra…
View article: Semantic-Driven Topic Modeling for Analyzing Creativity in Virtual Brainstorming
Semantic-Driven Topic Modeling for Analyzing Creativity in Virtual Brainstorming Open
Virtual brainstorming sessions have become a central component of collaborative problem solving, yet the large volume and uneven distribution of ideas often make it difficult to extract valuable insights efficiently. Manual coding of ideas…
View article: Psychotropic Medication-related Black Hairy Tongue: A Case Series
Psychotropic Medication-related Black Hairy Tongue: A Case Series Open
View article: Explainable AI: XAI-guided context-aware data augmentation
Explainable AI: XAI-guided context-aware data augmentation Open
View article: Exploring adjunctive continuous theta burst stimulation for treatment-resistant auditory hallucinations in schizophrenia: Insights from a case series
Exploring adjunctive continuous theta burst stimulation for treatment-resistant auditory hallucinations in schizophrenia: Insights from a case series Open
Background: Auditory hallucinations affect 60%–80% of schizophrenia patients, often causing distress and functional impairment. Despite antipsychotic treatment, 30% remain resistant. Dysfunctional prefrontal-temporal connectivity has been …
View article: Outcome of Cerebral Venous Thrombosis Requiring Mechanical Ventilation
Outcome of Cerebral Venous Thrombosis Requiring Mechanical Ventilation Open
Background: Patients with cerebral venous thrombosis (CVT) requiring mechanical ventilation (MV) may have a severe procoagulant state, extensive venous sinus thrombosis, and a worse outcome, but there is a paucity of studies on this topic.…
View article: Linear Decoding of Morphology Relations in Language Models (Student Abstract)
Linear Decoding of Morphology Relations in Language Models (Student Abstract) Open
The recent success of transformer language models owes much to their conversational fluency, which includes linguistic and morphological proficiency. An affine Taylor approximation has been found to be a good approximation for transformer …
View article: A Comparative Study of Metoprolol and Amlodipine on Mortality, Disability and Complication in Acute Stroke
A Comparative Study of Metoprolol and Amlodipine on Mortality, Disability and Complication in Acute Stroke Open
Stress in acute stroke may increase mortality and complications, but there is a paucity of information on the efficacy of beta blockers over other anti-hypertensive. To report efficacy of metoprolol over amlodipine in reducing mortality, d…
View article: A Unified Framework with Novel Metrics for Evaluating the Effectiveness of XAI Techniques in LLMs
A Unified Framework with Novel Metrics for Evaluating the Effectiveness of XAI Techniques in LLMs Open
The increasing complexity of LLMs presents significant challenges to their transparency and interpretability, necessitating the use of eXplainable AI (XAI) techniques to enhance trustworthiness and usability. This study introduces a compre…
View article: Predictors and Outcome of Cerebral Venous Sinus Thrombosis Requiring Mechanical Ventilation
Predictors and Outcome of Cerebral Venous Sinus Thrombosis Requiring Mechanical Ventilation Open
Background: The patients with cerebral venous thrombosis (CVT) having raised intracranial pressure and seizures require admission to the intensive care unit (ICU). We report the outcomes of ICU admitted CVT patients, and compare the in-hos…
View article: Efficacy and safety of levodopa in secondary dystonia due to neurological Wilson disease (LIDWID)
Efficacy and safety of levodopa in secondary dystonia due to neurological Wilson disease (LIDWID) Open
BACKGROUND: Dystonia is the most prevalent movement disorder in neurologic Wilson disease (NWD). While levodopa has demonstrated efficacy in certain forms of primary dystonia, its effectiveness in NWD has not been evaluated. This study aim…
View article: Linear Relational Decoding of Morphology in Language Models
Linear Relational Decoding of Morphology in Language Models Open
View article: Outcome Predictors of Generalized Myasthenia Gravis: A Prospective Observational Study
Outcome Predictors of Generalized Myasthenia Gravis: A Prospective Observational Study Open
Background and Objectives: There is paucity of studies on long-term remission of autoimmune generalized myasthenia gravis (MG) from Southeast Asia. We report the outcome predictors of generalized MG and also evaluate the influence of high-…
View article: Data-Efficient Approaches for Hate Speech Detection Tasks in Under-Resourced Languages
Data-Efficient Approaches for Hate Speech Detection Tasks in Under-Resourced Languages Open
View article: Explainability in Neural Networks for Natural Language Processing Tasks
Explainability in Neural Networks for Natural Language Processing Tasks Open
Neural networks are widely regarded as black-box models, creating significant challenges in understanding their inner workings, especially in natural language processing (NLP) applications. To address this opacity, model explanation techni…
View article: Prospective Observational Cohort Study of Tenecteplase: Results From the Indian Registry in Ischemic Stroke‐Tenecteplase
Prospective Observational Cohort Study of Tenecteplase: Results From the Indian Registry in Ischemic Stroke‐Tenecteplase Open
Background Tenecteplase has been approved for acute ischemic stroke at a dose of 0.2 mg/kg by the Indian licensing authority. A registry to evaluate the safety of tenecteplase was mandated by the licensing authority. The research aim was t…
View article: Temporal Pattern of Individual Neurological Function Recovery in Guillain–Barré Syndrome
Temporal Pattern of Individual Neurological Function Recovery in Guillain–Barré Syndrome Open
Background: There is paucity of studies on the temporal pattern of recovery of facial, bulbar, sensory, motor, and autonomic dysfunction in Guillain–Barré syndrome (GBS), although many studies have reported short- and long-term functional …
View article: Stability of Anticoagulation Following Acenocoumarin in Stroke Patients: Role of Pharmacogenomics and Acquired Factors
Stability of Anticoagulation Following Acenocoumarin in Stroke Patients: Role of Pharmacogenomics and Acquired Factors Open
Objective: Pharmacogenomics plays an important role in drug metabolism. A stable anticoagulation is important for primary and secondary prevention of cardioembolic stroke and cerebral venous sinus thrombosis (CVST). We report the role of c…
View article: EthioMT: Parallel Corpus for Low-resource Ethiopian Languages
EthioMT: Parallel Corpus for Low-resource Ethiopian Languages Open
Recent research in natural language processing (NLP) has achieved impressive performance in tasks such as machine translation (MT), news classification, and question-answering in high-resource languages. However, the performance of MT leav…
View article: Myositis in H1N1 Infection Compounds to Myasthenic Crisis
Myositis in H1N1 Infection Compounds to Myasthenic Crisis Open
Infection is an important trigger of myasthenic crisis (MC), and those infections manifest with pneumonia and muscle involvement may result in more frequent MC. We report two myasthenia gravis (MG) patients with H1N1 infection, and highlig…
View article: Abstractive Text Summarization Using the BRIO Training Paradigm
Abstractive Text Summarization Using the BRIO Training Paradigm Open
Summary sentences produced by abstractive summarization models may be coherent and comprehensive, but they lack control and rely heavily on reference summaries. The BRIO training paradigm assumes a non-deterministic distribution to reduce …
View article: Enhancing Translation for Indigenous Languages: Experiments with Multilingual Models
Enhancing Translation for Indigenous Languages: Experiments with Multilingual Models Open
Atnafu Lambebo Tonja, Hellina Hailu Nigatu, Olga Kolesnikova, Grigori Sidorov, Alexander Gelbukh, Jugal Kalita. Proceedings of the Workshop on Natural Language Processing for Indigenous Languages of the Americas (AmericasNLP). 2023.
View article: Blood-CSF-barrier permeability in tuberculous meningitis and its association with clinical, MRI and inflammatory cytokines
Blood-CSF-barrier permeability in tuberculous meningitis and its association with clinical, MRI and inflammatory cytokines Open
Objective: Blood -cerebrospinal fluid (B-CSF) barrier disruption in tuberculous meningitis (TBM) may be mediated by inflammatory cytokines and may determine clinico–radiological severity and outcome. We report B-CSF permeability in TBM and…
View article: Case Report: Focal Myoclonus with a Striatal Lesion as a Presentation of Subacute Sclerosing Panencephalitis
Case Report: Focal Myoclonus with a Striatal Lesion as a Presentation of Subacute Sclerosing Panencephalitis Open
Adult-onset subacute sclerosing panencephalitis (SSPE) is rare, and focal myoclonus as a presenting feature poses a diagnostic dilemma. We report an adult SSPE patient with unusual clinical and radiological features. A 20-year-old girl had…
View article: Changing Spectrum of Acute Encephalitis Syndrome in India and a Syndromic Approach
Changing Spectrum of Acute Encephalitis Syndrome in India and a Syndromic Approach Open
Acute encephalitis syndrome (AES) refers to an acute onset of fever and clinical neurological manifestation that includes mental confusion, disorientation, delirium, or coma, which may occur because of infectious or non-infectious causes. …
View article: Feasibility and usefulness of tele-follow-up in the patients with tuberculous meningitis
Feasibility and usefulness of tele-follow-up in the patients with tuberculous meningitis Open
Background Tuberculous meningitis (TBM) is the most severe form of tuberculosis and these patients need close follow-up because of a high frequency of complications. The coronavirus disease 2019 pandemic and lockdown resulted in an interru…
View article: Corticosteroid-responsive Epilepsia Partialis Continua
Corticosteroid-responsive Epilepsia Partialis Continua Open
Epilepsia partialis continua (EPC) is a rare form of status epilepticus and often refractory to antiepileptic drugs (AEDs). Persistent seizure activity may increase pro-inflammatory biomarkers locally, which may respond to adjunctive corti…
View article: Mechanism, spectrum, consequences and management of hyponatremia in tuberculous meningitis
Mechanism, spectrum, consequences and management of hyponatremia in tuberculous meningitis Open
Hyponatremia is the commonest electrolyte abnormality in hospitalized patients and is associated with poor outcome. Hyponatremia is categorized on the basis of serum sodium into severe (< 120 mEq/L), moderate (120-129 mEq/L) and mild (130-…
View article: Impact of COVID-19 pandemic and lockdown in a cohort of myasthenia gravis patients in India
Impact of COVID-19 pandemic and lockdown in a cohort of myasthenia gravis patients in India Open
View article: Cerebral Venous Sinus Thrombosis and Pachymeningitis in IgG4 Related Disease
Cerebral Venous Sinus Thrombosis and Pachymeningitis in IgG4 Related Disease Open