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View article: Advanced Layout Analysis Models for Docling
Advanced Layout Analysis Models for Docling Open
This technical report documents the development of novel Layout Analysis models integrated into the Docling document-conversion pipeline. We trained several state-of-the-art object detectors based on the RT-DETR, RT-DETRv2 and DFINE archit…
View article: Docling: An Efficient Open-Source Toolkit for AI-driven Document Conversion
Docling: An Efficient Open-Source Toolkit for AI-driven Document Conversion Open
We introduce Docling, an easy-to-use, self-contained, MIT-licensed, open-source toolkit for document conversion, that can parse several types of popular document formats into a unified, richly structured representation. It is powered by st…
View article: Docling Technical Report
Docling Technical Report Open
This technical report introduces Docling, an easy to use, self-contained, MIT-licensed open-source package for PDF document conversion. It is powered by state-of-the-art specialized AI models for layout analysis (DocLayNet) and table struc…
View article: ESG Accountability Made Easy: DocQA at Your Service
ESG Accountability Made Easy: DocQA at Your Service Open
We present Deep Search DocQA. This application enables information extraction from documents via a question-answering conversational assistant. The system integrates several technologies from different AI disciplines consisting of document…
View article: ESG Accountability Made Easy: DocQA at Your Service
ESG Accountability Made Easy: DocQA at Your Service Open
We present Deep Search DocQA. This application enables information extraction from documents via a question-answering conversational assistant. The system integrates several technologies from different AI disciplines consisting of document…
View article: A virally encoded GPCR drives glioblastoma through feed-forward activation of the SK1-S1P <sub>1</sub> signaling axis
A virally encoded GPCR drives glioblastoma through feed-forward activation of the SK1-S1P <sub>1</sub> signaling axis Open
The G protein–coupled receptor (GPCR) US28 encoded by the human cytomegalovirus (HCMV) is associated with accelerated progression of glioblastomas, aggressive brain tumors with a generally poor prognosis. Here, we showed that US28 increase…
View article: Robust PDF Document Conversion using Recurrent Neural Networks
Robust PDF Document Conversion using Recurrent Neural Networks Open
The number of published PDF documents in both the academic and commercial world has increased exponentially in recent decades. There is a growing need to make their rich content discoverable to information retrieval tools. Achieving high-q…
View article: hms-dbmi/higlass v1.5.2
hms-dbmi/higlass v1.5.2 Open
Fast large scale matrix visualization for the web.
View article: HiGlass: web-based visual exploration and analysis of genome interaction maps
HiGlass: web-based visual exploration and analysis of genome interaction maps Open
We present HiGlass, an open source visualization tool built on web technologies that provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps alongside 1D genomic tracks, allowing users to combine variou…
View article: eXamine: Visualizing annotated networks in Cytoscape
eXamine: Visualizing annotated networks in Cytoscape Open
eXamine is a Cytoscape app that displays set membership as contours on top of a node-link layout of a small graph. In addition to facilitating interpretation of enriched gene sets of small biological networks, eXamine can be used in other …
View article: ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms’ proteomes
ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms’ proteomes Open
Motivation Protein evolution spans time scales and its effects span the length of an organism. A web app named ProteomeVis is developed to provide a comprehensive view of protein evolution in the Saccharomyces cerevisiae and Escherichia co…
View article: eXamine: Visualizing annotated networks in Cytoscape
eXamine: Visualizing annotated networks in Cytoscape Open
eXamine is a Cytoscape app that displays set membership as contours on top of a node-link layout of a small graph. In addition to facilitating interpretation of enriched gene sets of small biological networks, eXamine can be used in other …
View article: ls-cwi/eXamine: Automation Submission Version
ls-cwi/eXamine: Automation Submission Version Open
eXamine is a Cytoscape app for a set-oriented visual analysis approach for annotated modules that displays set membership as contours on top of a node-link layout.
View article: ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms’ proteomes
ProteomeVis: a web app for exploration of protein properties from structure to sequence evolution across organisms’ proteomes Open
Motivation Protein evolution spans time scales and its effects span the length of an organism. A web app named ProteomeVis is developed to provide a comprehensive view of protein evolution in the S. cerevisiae and E. coli proteomes. Proteo…