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View article: Author Correction: Modulating the immune response to SARS-CoV-2 by different nanocarriers delivering an mRNA expressing trimeric RBD of the spike protein: COVARNA Consortium
Author Correction: Modulating the immune response to SARS-CoV-2 by different nanocarriers delivering an mRNA expressing trimeric RBD of the spike protein: COVARNA Consortium Open
Correction to: npj Vaccines (2024) 9:53; https://doi.org/10.1038/s41541-024-00838-8, published online 06 March 2024 http://hdl.handle.net/10261/353891
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View article: Modulating the immune response to SARS-CoV-2 by different nanocarriers delivering an mRNA expressing trimeric RBD of the spike protein: COVARNA Consortium
Modulating the immune response to SARS-CoV-2 by different nanocarriers delivering an mRNA expressing trimeric RBD of the spike protein: COVARNA Consortium Open
Vaccines based on mRNA technology have revolutionized the field. In fact, lipid nanoparticles (LNP) formulated with mRNA are the preferential vaccine platform used in the fight against SARS-CoV-2 infection, with wider application against o…
View article: A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications
A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications Open
Open Science is a paradigm in which scientific data, procedures, tools and results are shared transparently and reused by society as a whole. The initiative known as the European Open Science Cloud (EOSC) is an effort in Europe to provide …
View article: DAC Portal prototype, validated analytical workflows, analysis prototype, updated metadata standards and portal prototype
DAC Portal prototype, validated analytical workflows, analysis prototype, updated metadata standards and portal prototype Open
We report on the selection of the appropriate data models to handle the available data and metadata to the iPC Central Computational and Data platform. We also report on the current status of the development for the iPC Data portal.
View article: The Quest for Orthologs orthology benchmark service in 2022
The Quest for Orthologs orthology benchmark service in 2022 Open
The Orthology Benchmark Service (https://orthology.benchmarkservice.org) is the gold standard for orthology inference evaluation, supported and maintained by the Quest for Orthologs consortium. It is an essential resource to compare existi…
View article: Recommended metadata standards and portal prototype
Recommended metadata standards and portal prototype Open
This is the accepted iPC deliverable D2.3 „Recommended metadata standards and portal prototype“. The iPC project aims to ensure interoperability of data between different resources, so the platform must enforce principles and well-defined …
View article: euCanSHare. Deliverable 3.2 - Data Management Plan v2
euCanSHare. Deliverable 3.2 - Data Management Plan v2 Open
D3.2 summarizes the required updates on the euCanSHare’s Data Management Plan, after the first half of the project execution. The document highlights the additions made on the DMP and the reasons behind. The updated DMP is included as an A…
View article: euCanSHare. Deliverable D2.2 - Data distribution protocols and interfaces
euCanSHare. Deliverable D2.2 - Data distribution protocols and interfaces Open
This document reviews the efforts dedicated to the development and implementation of interoperability channels among euCanSHare components, as well as the creation of uniformed connections with external consumers and services. A common OID…
View article: The Quest for Orthologs benchmark service and consensus calls in 2020
The Quest for Orthologs benchmark service and consensus calls in 2020 Open
The identification of orthologs—genes in different species which descended from the same gene in their last common ancestor—is a prerequisite for many analyses in comparative genomics and molecular evolution. Numerous algorithms and resour…
View article: euCanSHare. Deliverables D2.1 - Initial Infrastructure framework and documentation
euCanSHare. Deliverables D2.1 - Initial Infrastructure framework and documentation Open
euCanSHare deliverable D2.1 reporting on the initial infrastructure of the framework and documentation. Abstract: EuCanSHare aims to establish a unified environment for cardiovascular data sharing and analysis. The euCanSHare data platform…
View article: Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning
Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning Open
We present Nucleosome Dynamics, a suite of programs integrated into a virtual research environment and created to define nucleosome architecture and dynamics from noisy experimental data. The package allows both the definition of nucleosom…
View article: MuGVRE. A virtual research environment for 3D/4D genomics
MuGVRE. A virtual research environment for 3D/4D genomics Open
Multiscale Genomics (MuG) Virtual Research Environment (MuGVRE) is a cloud-based computational infrastructure created to support the deployment of software tools addressing the various levels of analysis in 3D/4D genomics. Integrated tools…
View article: Experimental data and benchmarks used in the paper "Nucleosome Dynamics: A new tool for the dynamic analysis of nucleosome positioning"
Experimental data and benchmarks used in the paper "Nucleosome Dynamics: A new tool for the dynamic analysis of nucleosome positioning" Open
Experimental data used to illustrate the analysis with Nucleosome Dynamics pipeline. Three publicly available data sets were used: Yeast metabolic cycle MNase-seq data downloaded from GEO under accession number GSE77631 corresponding to ti…
View article: Experimental data and benchmarks used in the paper "Nucleosome Dynamics: A new tool for the dynamic analysis of nucleosome positioning"
Experimental data and benchmarks used in the paper "Nucleosome Dynamics: A new tool for the dynamic analysis of nucleosome positioning" Open
Experimental data used to illustrate the analysis with Nucleosome Dynamics pipeline. Three publicly available data sets were used: Yeast metabolic cycle MNase-seq data downloaded from GEO under accession number GSE77631 corresponding to ti…