Larissa Ramsay
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View article: Oligo-FISH Validates Genome Assemblies and Delivers the Most Precise Karyotype for<i>Lens</i>Mill. Species
Oligo-FISH Validates Genome Assemblies and Delivers the Most Precise Karyotype for<i>Lens</i>Mill. Species Open
Chromosome structural rearrangements play a significant role in karyotype evolution and speciation. These rearrangements pose challenges for precise karyotyping, leading to asymmetric chromosomes and complicating the assembly of a genus pa…
View article: CRISPR/Cas9-based repeat depletion for the high-throughput genotyping of complex plant genomes
CRISPR/Cas9-based repeat depletion for the high-throughput genotyping of complex plant genomes Open
High-throughput genotyping enables the large-scale analysis of genetic diversity in population genomics and genomewide association studies that combine the genotypic and phenotypic characterization of large collections of accessions. Seque…
View article: Identification of anthracnose race 1 resistance loci in lentil by integrating linkage mapping and genome‐wide association study
Identification of anthracnose race 1 resistance loci in lentil by integrating linkage mapping and genome‐wide association study Open
Anthracnose, caused by Colletotrichum lentis , is a devastating disease of lentil ( Lens culinaris Medik.) in western Canada. Growing resistant lentil cultivars is the most cost‐effective and environmentally friendly approach to prevent se…
View article: Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species
Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species Open
Understanding the genomic relationship between wild and cultivated genomes would facilitate access to the untapped variability found in crop wild relatives. We developed genome assemblies of a cultivated lentil ( Lens culinaris ) as well a…
View article: Genetic and gene expression analysis of flowering time regulation by light quality in lentil
Genetic and gene expression analysis of flowering time regulation by light quality in lentil Open
Background and Aims Flowering time is important due to its roles in plant adaptation to different environments and subsequent formation of crop yield. Changes in light quality affect a range of developmental processes including flowering t…
View article: Identification of anthracnose (<i>Colletotrichum lentis</i>) race 1 resistance loci in lentil by integrating linkage mapping and a genome-wide association study
Identification of anthracnose (<i>Colletotrichum lentis</i>) race 1 resistance loci in lentil by integrating linkage mapping and a genome-wide association study Open
Anthracnose, caused by Colletotrichum lentis , is a devastating disease of lentil in Western Canada. Growing resistant lentil cultivars is the most cost-effective and environmentally friendly approach to prevent seed yield losses that can …
View article: Genetic and gene expression analysis of flowering time regulation by light quality in lentil
Genetic and gene expression analysis of flowering time regulation by light quality in lentil Open
Flowering time is important due to its roles in adaptation to different environments and subsequent formation of crop yield. Changes in light quality affect a range of developmental processes including flowering time, however little is kno…
View article: Genomic selection for lentil breeding: Empirical evidence
Genomic selection for lentil breeding: Empirical evidence Open
Genomic selection (GS) is a marker‐based selection initially suggested for livestock breeding and is being encouraged for crop breeding. Several statistical models are used to implement GS; however, none have been tested for use in lentil …
View article: Genomic selection for lentil breeding: empirical evidence
Genomic selection for lentil breeding: empirical evidence Open
Genomic selection (GS) is a type of marker-based selection which was initially suggested for livestock breeding and is being encouraged for crop breeding. Several statistical models and approaches have been developed to implement GS; howev…
View article: Defense responses of lentil (Lens culinaris) genotypes carrying non-allelic ascochyta blight resistance genes to Ascochyta lentis infection
Defense responses of lentil (Lens culinaris) genotypes carrying non-allelic ascochyta blight resistance genes to Ascochyta lentis infection Open
Ascochyta blight of lentil is an important fungal disease in many lentil-producing regions of the world causing major yield and grain quality losses. Quick shifts in aggressiveness of the population of the causal agent Ascochyta lentis man…
View article: Capturing variation in <i>Lens</i> (Fabaceae): Development and utility of an exome capture array for lentil
Capturing variation in <i>Lens</i> (Fabaceae): Development and utility of an exome capture array for lentil Open
Premise of the Study Lentil is an important legume crop with reduced genetic diversity caused by domestication bottlenecks. Due to its large and complex genome, tools for reduced representation sequencing are needed. We developed an exome …
View article: Data on draft genome sequence of chickpea (Cicer arietinum)
Data on draft genome sequence of chickpea (Cicer arietinum) Open
The dataset contains genome sequence of the ~738 Mb chickpea genome from CDC Frontier, a kabuli variety, which contains an estimated 28,269 genes. Re-sequencing and analysis of 90 cultivated and wild genotypes from 10 different countries i…
View article: Additional file 2: of Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping
Additional file 2: of Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping Open
A) List of SNPs identified in 6 P. vulgaris and 2 P. acutifolius genotypes along with the corresponding homologues position in Pv1.0 assembly, B) SNPs exclusive to teparies, C) results of SNPs selected for KASP assay, D) Pv768 GoldenGate a…
View article: Additional file 3: of Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping
Additional file 3: of Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping Open
A) BR-06 map with binned marker loci and corresponding P. vulgaris pseudochromosome locations and B) SNP genotypes for 158 accessions using Pac768 GoldenGate assay. (XLSX 497Â kb)
View article: Additional file 1: of Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping
Additional file 1: of Gene-based SNP discovery in tepary bean (Phaseolus acutifolius) and common bean (P. vulgaris) for diversity analysis and comparative mapping Open
List of P. acutifolius accessions selected for phylogenetic analysis. (XLSX 19Â kb)