Laura Gargan
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View article: Supplementary material 1 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Supplementary material 1 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657 Open
The mitochondrial cytochrome C oxidase subunit I gene (COI) is commonly used in environmental DNA (eDNA) metabarcoding studies, especially for assessing metazoan diversity. Yet, a great number of COI operational taxonomic units (OTUs) or/a…
View article: Supplementary material 4 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Supplementary material 4 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657 Open
Figure S2
View article: Supplementary material 2 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Supplementary material 2 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657 Open
The mitochondrial cytochrome C oxidase subunit I gene (COI) is commonly used in environmental DNA (eDNA) metabarcoding studies, especially for assessing metazoan diversity. Yet, a great number of COI operational taxonomic units (OTUs) or/a…
View article: Supplementary material 3 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657
Supplementary material 3 from: Zafeiropoulos H, Gargan L, Hintikka S, Pavloudi C, Carlsson J (2021) The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data. Metabarcoding and Metagenomics 5: e69657. https://doi.org/10.3897/mbmg.5.69657 Open
Figure S1
View article: The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data
The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data Open
The mitochondrial cytochrome C oxidase subunit I gene (COI) is commonly used in environmental DNA (eDNA) metabarcoding studies, especially for assessing metazoan diversity. Yet, a great number of COI operational taxonomic units (OTUs) or/a…
View article: Investigation of the transcriptomic response in Atlantic salmon (Salmo salar) gill exposed to Paramoeba perurans during early onset of disease
Investigation of the transcriptomic response in Atlantic salmon (Salmo salar) gill exposed to Paramoeba perurans during early onset of disease Open
View article: Development of an environmental DNA assay and field validation for the detection of invasive pink salmon <i>Oncorhynchus gorbuscha</i>
Development of an environmental DNA assay and field validation for the detection of invasive pink salmon <i>Oncorhynchus gorbuscha</i> Open
Pink salmon Oncorhynchus gorbuscha was introduced from its native range in the Pacific to Northwest Russia several times since the 1950s. While this species has been regularly observed in rivers in northern Norway since then, there has bee…
View article: Comparative analysis of single nucleotide polymorphisms and microsatellite markers for parentage verification and discovery within the equine Thoroughbred breed
Comparative analysis of single nucleotide polymorphisms and microsatellite markers for parentage verification and discovery within the equine Thoroughbred breed Open
Short tandem repeat (STR), also known as microsatellite markers are currently used for genetic parentage verification within equine. Transitioning from STR to single nucleotide polymorphism (SNP) markers to perform equine parentage verific…
View article: Bacteria are everywhere, even in your COI marker gene data!
Bacteria are everywhere, even in your COI marker gene data! Open
The mitochondrial cytochrome C oxidase subunit I gene (COI) is commonly used in eDNA metabarcoding studies, especially for assessing metazoan diversity. Yet, a great number of COI operational taxonomic units or/and amplicon sequence varian…
View article: The Essentials of Marine Biotechnology
The Essentials of Marine Biotechnology Open
Coastal countries have traditionally relied on the existing marine resources (e.g., fishing, food, transport, recreation, and tourism) as well as tried to support new economic endeavors (ocean energy, desalination for water supply, and sea…
View article: Bacteria are everywhere, even in your COI data: Τhe art of getting to know the unknown unknowns and shine light on the dark matter!
Bacteria are everywhere, even in your COI data: Τhe art of getting to know the unknown unknowns and shine light on the dark matter! Open
Environmental DNA (eDNA) metabarcoding has been commonly used in recent years (Jeunen et al. 2019) for the identification of the species composition of environmental samples. By making use of genetic markers anchored in conserved gene regi…
View article: Investigation of the Transcriptomic Response of Atlantic Salmon (Salmo Salar) Exposed to Paramoeba Perurans Using Next Generation Sequencing
Investigation of the Transcriptomic Response of Atlantic Salmon (Salmo Salar) Exposed to Paramoeba Perurans Using Next Generation Sequencing Open
Amoebic Gill Disease (AGD), caused by the protozoan extracellular parasite Paramoeba perurans , is a disease affecting Atlantic salmon ( Salmo salar ) aquaculture. Many studies to date have investigated the pathogenesis of ADG focusing on …
View article: A New Network for the Advancement of Marine Biotechnology in Europe and Beyond
A New Network for the Advancement of Marine Biotechnology in Europe and Beyond Open
Marine organisms produce a vast diversity of metabolites with biological activities useful for humans, e.g., cytotoxic, antioxidant, anti-microbial, insecticidal, herbicidal, anticancer, pro-osteogenic and pro-regenerative, analgesic, anti…
View article: Environmental (e)DNA detection of the invasive pink salmon <i>Oncorhynchus gorbuscha</i> during the 2017 Norwegian invasion
Environmental (e)DNA detection of the invasive pink salmon <i>Oncorhynchus gorbuscha</i> during the 2017 Norwegian invasion Open
The pink salmon Oncorhynchus gorbuscha was introduced from its native range in the Pacific to Northwest Russia several times since the 1950’s. While this species has been regularly observed in rivers in Northern Norway since that time, the…
View article: Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts
Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts Open
View article: Molecular and morphological insights into the origin of the invasive greater white-toothed shrew (Crocidura russula) in Ireland
Molecular and morphological insights into the origin of the invasive greater white-toothed shrew (Crocidura russula) in Ireland Open