Laurence Mathieu
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View article: All in one: holographic microscopy unveils bacterial transport from single cells to population
All in one: holographic microscopy unveils bacterial transport from single cells to population Open
Prior to pioneer surface adhesion, bacteria have to navigate in flows, often in confined environments. While much is known about their individual swimming dynamics, our understanding of their transport properties at the population level r…
View article: Identifying the Effects of Fish and Rhizosphere on the Structure of the Planktonic Bacterial Communities and Resistome in an Aquaponics Recirculation Loop
Identifying the Effects of Fish and Rhizosphere on the Structure of the Planktonic Bacterial Communities and Resistome in an Aquaponics Recirculation Loop Open
Since they are saving resources, recirculating aquaculture systems (RAS) are perceived as a viable production strategy. Among them, aquaponics combines aquaculture and hydroponic vegetable production. This system entails a closed‐loop wate…
View article: ImmunoFOMO: Are Language Models missing what oncologists see?
ImmunoFOMO: Are Language Models missing what oncologists see? Open
Language models (LMs) capabilities have grown with a fast pace over the past decade leading researchers in various disciplines, such as biomedical research, to increasingly explore the utility of LMs in their day-to-day applications. Domai…
View article: Weichselian lateglacial and Holocene fluvial dynamics variability in the Somme basin: the evolution of an alluvial peatland
Weichselian lateglacial and Holocene fluvial dynamics variability in the Somme basin: the evolution of an alluvial peatland Open
The Somme basin is one of the most extensive alkaline alluvial peatland systems in North-West Europe. The Weichselian Lateglacial and Holocene peat sequences from this basin have remarkable potential for palaeoenvironmental reconstructions…
View article: Investigating strategies for lexical complexity prediction in a multilingual setting using generative language models and supervised approaches
Investigating strategies for lexical complexity prediction in a multilingual setting using generative language models and supervised approaches Open
This paper explores methods to automatically predict lexical complexity in a multilingual setting using advanced natural language processing models. More precisely, it investigates the use of transfer learning and data augmentation techniq…
View article: Domain-specific or Uncertainty-aware models: Does it really make a difference for biomedical text classification?
Domain-specific or Uncertainty-aware models: Does it really make a difference for biomedical text classification? Open
The success of pretrained language models (PLMs) across a spate of use-cases has led to significant investment from the NLP community towards building domain-specific foundational models. On the other hand, in mission critical settings suc…
View article: Growth dynamic of biofilm-associated Naegleria fowleri in freshwater on various materials
Growth dynamic of biofilm-associated Naegleria fowleri in freshwater on various materials Open
In industrial water systems, the occurrence of biofilm-associated pathogenic free-living amoebae (FLA) such as Naegleria fowleri is a potential hygienic problem, and factors associated with its occurrence remain poorly understood. This stu…
View article: Retrieve, Generate, Evaluate: A Case Study for Medical Paraphrases Generation with Small Language Models
Retrieve, Generate, Evaluate: A Case Study for Medical Paraphrases Generation with Small Language Models Open
International audience
View article: No Imputation Needed: A Switch Approach to Irregularly Sampled Time Series
No Imputation Needed: A Switch Approach to Irregularly Sampled Time Series Open
Modeling irregularly-sampled time series (ISTS) is challenging because of missing values. Most existing methods focus on handling ISTS by converting irregularly sampled data into regularly sampled data via imputation. These models assume a…
View article: "Mann" is to "Donna" as「国王」is to « Reine » Adapting the Analogy Task for Multilingual and Contextual Embeddings
"Mann" is to "Donna" as「国王」is to « Reine » Adapting the Analogy Task for Multilingual and Contextual Embeddings Open
How does the word analogy task fit in the modern NLP landscape? Given the rarity of comparable multilingual benchmarks and the lack of a consensual evaluation protocol for contextual models, this remains an open question. In this paper, we…
View article: Low-cost MRI devices and methods for real-time monitoring of flow and transfer phenomena in milli-channels
Low-cost MRI devices and methods for real-time monitoring of flow and transfer phenomena in milli-channels Open
An NMR/MRI methodology is developed for the study of flows in miniaturized systems handling volumes of fluid in the microliter range. Specific MRI devices are implemented, including radiofrequency coils with millimetric dimensions whose si…
View article: CME² Net: Contextual Medical Event Extraction Network for clinical notes
CME² Net: Contextual Medical Event Extraction Network for clinical notes Open
International audience
View article: „Mann“ is to “Donna” as「国王」is to « Reine » Adapting the Analogy Task for Multilingual and Contextual Embeddings
„Mann“ is to “Donna” as「国王」is to « Reine » Adapting the Analogy Task for Multilingual and Contextual Embeddings Open
How does the word analogy task fit in the modern NLP landscape? Given the rarity of comparable multilingual benchmarks and the lack of a consensual evaluation protocol for contextual models, this remains an open question. In this paper, we…
View article: IAI @ SocialDisNER: Catch me if you can! Capturing complex disease mentions in tweets
IAI @ SocialDisNER: Catch me if you can! Capturing complex disease mentions in tweets Open
International audience
View article: Semeval-2022 Task 1: CODWOE -- Comparing Dictionaries and Word Embeddings
Semeval-2022 Task 1: CODWOE -- Comparing Dictionaries and Word Embeddings Open
Word embeddings have advanced the state of the art in NLP across numerous tasks. Understanding the contents of dense neural representations is of utmost interest to the computational semantics community. We propose to focus on relating the…
View article: Semeval-2022 Task 1: CODWOE – Comparing Dictionaries and Word Embeddings
Semeval-2022 Task 1: CODWOE – Comparing Dictionaries and Word Embeddings Open
Word embeddings have advanced the state of the art in NLP across numerous tasks. Understanding the contents of dense neural representations is of utmost interest to the computational semantics community. We propose to focus on relating the…
View article: Surface Properties of Parabacteroides distasonis and Impacts of Stress-Induced Molecules on Its Surface Adhesion and Biofilm Formation Capacities
Surface Properties of Parabacteroides distasonis and Impacts of Stress-Induced Molecules on Its Surface Adhesion and Biofilm Formation Capacities Open
The gut microbiota is a complex and dynamic ecosystem whose balance and homeostasis are essential to the host’s well-being and whose composition can be critically affected by various factors, including host stress. Parabacteroides distason…
View article: Effects of path length on the linear and non-linear ultrasonic characterization of soft materials
Effects of path length on the linear and non-linear ultrasonic characterization of soft materials Open
International audience
View article: Multimorbidity in Elderly Persons According to the Year of Diagnosis of Human Immunodeficiency Virus Infection: A Cross-sectional Dat’AIDS Cohort Study
Multimorbidity in Elderly Persons According to the Year of Diagnosis of Human Immunodeficiency Virus Infection: A Cross-sectional Dat’AIDS Cohort Study Open
Background We assessed prevalence of multimorbidity (MM) according to year of human immunodeficiency virus (HIV) diagnosis in elderly people living with HIV (PLWH). Methods This was a cross-sectional study of MM in PLWH aged ≥70 years from…
View article: Physicochemical point of view in the evaluation of PR772 bacteriophage as a surrogate for human adenovirus
Physicochemical point of view in the evaluation of PR772 bacteriophage as a surrogate for human adenovirus Open
International audience
View article: Neural Lemmatization of Multiword Expressions
Neural Lemmatization of Multiword Expressions Open
International audience
View article: Pelagia noctiluca jellyfish: Can lesions and symptoms be prevented or ameliorated?
Pelagia noctiluca jellyfish: Can lesions and symptoms be prevented or ameliorated? Open
Objective: Pelagia noctiluca is a very common jellyfish found on European and Mediterranean coasts. Its venom can induce small to severe skin lesions and systemic toxicity. Hypertonicity and modulation of pH could prevent more nematocysts …
View article: ZnO Nanorods with High Photocatalytic and Antibacterial Activity under Solar Light Irradiation
ZnO Nanorods with High Photocatalytic and Antibacterial Activity under Solar Light Irradiation Open
ZnO nanorods (NRs) with an average length and diameter of 186 and 20 nm, respectively, were prepared through a mild solvothermal route and used as photocatalysts either as dispersed powder or immobilized on glass slides. The ZnO NRs were c…
View article: Assessment of a low-frequency ultrasound device on prevention of biofilm formation and carbonate deposition in drinking water systems
Assessment of a low-frequency ultrasound device on prevention of biofilm formation and carbonate deposition in drinking water systems Open
A device generating low-frequency and low-intensity ultrasound waves was used for mitigating biofilm accumulation and scaling. Two systems were tested: a lab-scale plate heat exchanger operated with continuously recycled water and a contin…
View article: Assessment of an anti-scale low-frequency electromagnetic field device on drinking water biofilms
Assessment of an anti-scale low-frequency electromagnetic field device on drinking water biofilms Open
Low intensity and very low-frequency electromagnetic fields (EMF) used for preventing scaling in water distribution systems were tested for the first time for their potential impact on drinking water biofilms. The assays were carried out i…