Leonore Reiser
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View article: A teaching and training framework to promote findable, accessible, interoperable, and reusable data generation in agriculture
A teaching and training framework to promote findable, accessible, interoperable, and reusable data generation in agriculture Open
Advances in agricultural genetic, genomic, and breeding (GGB) technologies generate increasingly large and complex datasets that need to be adequately managed and shared. While several agricultural biological databases maintain and curate …
View article: Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI) Open
Background Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their constructio…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: The Arabidopsis Information Resource in 2024
The Arabidopsis Information Resource in 2024 Open
Since 1999, The Arabidopsis Information Resource (www.arabidopsis.org) has been curating data about the Arabidopsis thaliana genome. Its primary focus is integrating experimental gene function information from the peer-reviewed literature …
View article: Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI) Open
Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their constructi…
View article: The Arabidopsis Information Resource in 2024
The Arabidopsis Information Resource in 2024 Open
Since 1999, The Arabidopsis Information Resource ( www.arabidopsis.org ) has been curating data about the Arabidopsis thaliana genome. Its primary focus is integrating experimental gene function information from the peer-reviewed literatur…
View article: An updated nomenclature for plant ribosomal protein genes
An updated nomenclature for plant ribosomal protein genes Open
Proponemos a la comunidad que trabaja con plantas una nueva nomenclatura universal y homogénea para las proteínas ribosomales (y sus parálogos)
View article: An updated nomenclature for plant ribosomal protein genes
An updated nomenclature for plant ribosomal protein genes Open
Ban et al . (2014) proposed a nomenclature for ribosomal proteins (r-proteins) that reflects the current understanding of ribosomal protein evolution. In the past few years, this nomenclature has been widely adopted among biomedical resear…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: Gene family data from the PhyloGenes (release version 2.2, phylogenes.org)
Gene family data from the PhyloGenes (release version 2.2, phylogenes.org) Open
About the two zip files: 1. phyloXML.zip PhyloGenes gene family trees in PhyloXML format, one file per family (e.g. .xml). The following information is provided for each node of a tree: 1) leaf node: branch length name taxonomy scientific…
View article: Gene family data from the PhyloGenes (release version 2.2, phylogenes.org)
Gene family data from the PhyloGenes (release version 2.2, phylogenes.org) Open
About the two zip files: 1. phyloXML.zip PhyloGenes gene family trees in PhyloXML format, one file per family (e.g. .xml). The following information is provided for each node of a tree: 1) leaf node: branch length name taxonomy scientific…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference
PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference Open
We aim to enable the accurate and efficient transfer of knowledge about gene function gained from Arabidopsis thaliana and other model organisms to other plant species. This knowledge transfer is frequently challenging in plants due to dup…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: Current status of the multinational Arabidopsis community
Current status of the multinational Arabidopsis community Open
The multinational Arabidopsis research community is highly collaborative and over the past thirty years these activities have been documented by the Multinational Arabidopsis Steering Committee (MASC). Here, we (a) highlight recent researc…
View article: TAIR functional annotation data 2020-06-30
TAIR functional annotation data 2020-06-30 Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data 2020-03-31
TAIR functional annotation data 2020-03-31 Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: Annotation of gene product function from high-throughput studies using the Gene Ontology
Annotation of gene product function from high-throughput studies using the Gene Ontology Open
High-throughput studies constitute an essential and valued source of information for researchers. However, high-throughput experimental workflows are often complex, with multiple data sets that may contain large numbers of false positives.…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: FAIR: A Call to Make Published Data More Findable, Accessible, Interoperable, and Reusable
FAIR: A Call to Make Published Data More Findable, Accessible, Interoperable, and Reusable Open
Biology has become an information-dense, data-intensive enterprise that requires the ability to access, integrate, and compute on large amounts of data. To enable better use of data, stakeholders (scientists, curators, librarians, and jour…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…
View article: TAIR functional annotation data
TAIR functional annotation data Open
Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org) The contents of the compressed archive include the following files which are described in detail in th…