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View article: Additional file 6 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions
Additional file 6 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions Open
Additional file 6. Up- and downregulated PPR genes in response to heat stress, grouped as common or cytoline-specific responses in the three cytolines.
View article: Additional file 4 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions
Additional file 4 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions Open
Additional file 4. GO terms enrichment analyses. Fold enrichment values of GO terms (biological process, molecular function, cell component) are presented in each of the three cytolines, using up- or down-DEGs as input in the analysis. A t…
View article: Additional file 5 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions
Additional file 5 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions Open
Additional file 5. Intersection of mitochondrial SNPs with the available GFF file. The intersect of the 527 mitochondrial SNP markers resulted from deep sequencing with the available GFF file [30] is detailed. The 133 intragenic markers ar…
View article: Additional file 7 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions
Additional file 7 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions Open
Additional file 7. Downregulation of photosynthesis-related genes* in the nuclear genome. A tick differentiates the genes that are downregulated in all three cytolines from the ones that are downregulated in at least one. The genes that ar…
View article: Additional file 1 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions
Additional file 1 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions Open
Additional file 1. Differentially expressed genes in the three cytolines. Up- and down-DEGs identified in this study are presented in six tabs, as gene IDs, annotations, and fold regulation (FR) values. Various groupings of these DEGs are …
View article: Additional file 2 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions
Additional file 2 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions Open
Additional file 2. Grouping of cytoline-specific DEGs with an FR > 2 into GO terms. Each of the three GO term categories (biological processes, molecular functions, and cell components) has a dedicated tab. Column headers indicate the GO t…
View article: Additional file 3 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions
Additional file 3 of Maize cytolines as models to study the impact of different cytoplasms on gene expression under heat stress conditions Open
Additional file 3. Fold regulation values for members of four gene families: bZIP, HSF, WRKY transcription factors, and HSP.