Linchun Shi
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View article: Construction of safer hirudin-derived peptides with enhanced anticoagulant properties based on C-terminal active residue adaptation and modification
Construction of safer hirudin-derived peptides with enhanced anticoagulant properties based on C-terminal active residue adaptation and modification Open
These findings provide an initial foundation and sequence reference for the development of safe and effective anticoagulant drugs with potential for clinical translation.
View article: Correction to: Development of UiO‐66‐NH <sub>2</sub> and RuO <sub>2</sub> composite‐modified carbon fiber for highly sensitive sensing of ferulic acid
Correction to: Development of UiO‐66‐NH <sub>2</sub> and RuO <sub>2</sub> composite‐modified carbon fiber for highly sensitive sensing of ferulic acid Open
View article: Species identification of biological ingredients in herbal product, Gurigumu-7, based on DNA barcoding and shotgun metagenomics
Species identification of biological ingredients in herbal product, Gurigumu-7, based on DNA barcoding and shotgun metagenomics Open
Accurate identification the species composition in mixtures poses a significant challenge, especially in processed mixtures comprising multiple species, such as those found in food and pharmaceuticals. Therefore, we have attempted to utili…
View article: Comparative chloroplast genomes: insights into the identification and phylogeny of rapid radiation genus Rhodiola
Comparative chloroplast genomes: insights into the identification and phylogeny of rapid radiation genus Rhodiola Open
Rhodiola L. is a genus exhibiting rapid radiation and represents a typical case for studying plastid gene adaptation in species that spread from high altitudes to low altitudes. In this study, 23 samples of 18 Rhodiola species were collect…
View article: Editorial: Structural variation of the chloroplast genome and related bioinformatics tools
Editorial: Structural variation of the chloroplast genome and related bioinformatics tools Open
Citation: Shi L, Zhang G, Mohanta TK, Kong W and Duan B (2024) Editorial: Structural variation of the chloroplast genome and related bioinformatics tools. Front. Plant Sci. 15:1341528. doi: 10.3389/fpls.2024.1341528
View article: Validation of the shotgun metabarcoding approach for comprehensively identifying herbal products containing plant, fungal, and animal ingredients
Validation of the shotgun metabarcoding approach for comprehensively identifying herbal products containing plant, fungal, and animal ingredients Open
Identifying plant, fungal, and animal ingredients in a specific mixture remains challenging during the limitation of PCR amplification and low specificity of traditional methods. Genomic DNA was extracted from mock and pharmaceutical sampl…
View article: The complete chloroplast genome and phylogenetic analysis of <i>Lemmaphyllum carnosum</i> var. <i>drymoglossoides</i> (baker) X. P. Wei, 2013
The complete chloroplast genome and phylogenetic analysis of <i>Lemmaphyllum carnosum</i> var. <i>drymoglossoides</i> (baker) X. P. Wei, 2013 Open
Lemmaphyllum carnosum var. drymoglossoides (Baker) X. P. Wei, 2013 is a valuable medicinal fern in China. Its complete chloroplast genome was determined using Illumina paired-end sequencing. The genome was 157,571 bp in lengt…
View article: Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis
Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis Open
View article: The complete chloroplast genome of <i>Pseudostellaria davidii</i> (franch.) Pax, 1934
The complete chloroplast genome of <i>Pseudostellaria davidii</i> (franch.) Pax, 1934 Open
Pseudostellaria davidii (Franch.) Pax belongs to subseries distancs of Pseudostellaria (Caryophyllaceae), and is mainly distributed in north-eastern Asia. The complete chloroplast (cp) genome of P. davidii was assemble…
View article: Physiological Stress Responses, Cocoon Survival and Gene Differential Expression of Leeches Anesthetized with Tricaine
Physiological Stress Responses, Cocoon Survival and Gene Differential Expression of Leeches Anesthetized with Tricaine Open
View article: Additional file 7 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis
Additional file 7 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis Open
Additional file 7: Table S5. List of non coding RNA (miRNA, tRNA, rRNA, snRNA).
View article: Differential Analysis in DNA Molecular and Protein Composition of Hirudo Nipponia Whitman Using DNA Barcoding and Protein-Based Reversed-Phase Hplc Fingerprint Analysis
Differential Analysis in DNA Molecular and Protein Composition of Hirudo Nipponia Whitman Using DNA Barcoding and Protein-Based Reversed-Phase Hplc Fingerprint Analysis Open
View article: Additional file 9 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis
Additional file 9 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis Open
Additional file 9: Table S7. Annotation of clusters performed by OrthoVenn2.
View article: Additional file 3 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis
Additional file 3 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis Open
Additional file 3: Table S1. Primers used in real-time PCR.
View article: Additional file 4 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis
Additional file 4 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis Open
Additional file 4: Table S2. Primers used for gene cloning.
View article: Additional file 6 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis
Additional file 6 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis Open
Additional file 6: Table S4. BUSCO assessment of the Whitmania pigra genome.
View article: The complete chloroplast genome and phylogenetic analysis of <i>Lemmaphyllum carnosum</i> var. <i>drymoglossoides</i> (baker) X. P. Wei, 2013
The complete chloroplast genome and phylogenetic analysis of <i>Lemmaphyllum carnosum</i> var. <i>drymoglossoides</i> (baker) X. P. Wei, 2013 Open
Lemmaphyllum carnosum var. drymoglossoides (Baker) X. P. Wei, 2013 is a valuable medicinal fern in China. Its complete chloroplast genome was determined using Illumina paired-end sequencing. The genome was 157,571 bp in lengt…
View article: Additional file 10 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis
Additional file 10 of Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis Open
Additional file 10: Table S8. RNA-Seq results of eight phases.
View article: Phylogenomic analyses based on the plastid genome and concatenated nrDNA sequence data reveal cytonuclear discordance in genus Atractylodes (Asteraceae: Carduoideae)
Phylogenomic analyses based on the plastid genome and concatenated nrDNA sequence data reveal cytonuclear discordance in genus Atractylodes (Asteraceae: Carduoideae) Open
Atractylodes species are widely distributed across East Asia and are cultivated as medicinal herbs in China, Japan, and Korea. Their unclear morphological characteristics and low levels of genetic divergence obscure the taxonomic relations…
View article: Comparative analysis of medicinal plant Isodon rubescens and its common adulterants based on chloroplast genome sequencing
Comparative analysis of medicinal plant Isodon rubescens and its common adulterants based on chloroplast genome sequencing Open
Isodon rubescens (Hemsley) H. Hara is the source of Donglingcao under the monograph Rabdosiae Rubescentis Herba in Chinese Pharmacopoeia. In the local marketplace, this medicine can be accidentally contaminated, deliberately substituted, o…
View article: Single-Molecule Real-Time Sequencing to Explore the Mycobiome Diversity in Malt
Single-Molecule Real-Time Sequencing to Explore the Mycobiome Diversity in Malt Open
Fungal contamination and secondary metabolite accumulation in agricultural products represent a global food safety challenge. Although high-throughput sequencing (HTS) is beneficial for explaining fungal communities, it presents disadvanta…
View article: The first complete chloroplast genome of <i>Briggsia chienii</i> W. Y. Chun and its phylogenetic position within Gesneriaceae
The first complete chloroplast genome of <i>Briggsia chienii</i> W. Y. Chun and its phylogenetic position within Gesneriaceae Open
Briggsia chienii W. Y. Chun 1946 is an endemic herbaceous perennial species distributed in southern China. In this study, we firstly characterized the complete chloroplast genome sequence of B. chienii and provided new molecu…
View article: Identification of the original plants of cultivated Bupleuri Radix based on DNA barcoding and chloroplast genome analysis
Identification of the original plants of cultivated Bupleuri Radix based on DNA barcoding and chloroplast genome analysis Open
Bupleuri Radix is the dry root of certain species of the genus Bupleurum and is commonly used in traditional Chinese medicine. The increasing global demand for Bupleuri Radix cannot be fulfilled with wild populations only. Therefore, culti…
View article: Development of a graphene oxide nanosheet and double-stranded DNA structure based fluorescent “signal off” aptasensor for ochratoxin A detection in malt
Development of a graphene oxide nanosheet and double-stranded DNA structure based fluorescent “signal off” aptasensor for ochratoxin A detection in malt Open
View article: Transfer behavior of pesticides from honeysuckle into tea infusions: Establishment of an empirical model for transfer rate prediction
Transfer behavior of pesticides from honeysuckle into tea infusions: Establishment of an empirical model for transfer rate prediction Open
Affected by some external conditions and internal factors, pesticides can be transferred from tea into its infusion, causing subsequent damage to humans as tea infusion is generally consumed. This study aimed to explore the inherent regula…
View article: Characterization of the complete mitochondrial genome of <i>Haemadipsa tianmushana</i> Song 1977 (Hirudiniformes, Haemadipsidae) and its phylogenetic analysis
Characterization of the complete mitochondrial genome of <i>Haemadipsa tianmushana</i> Song 1977 (Hirudiniformes, Haemadipsidae) and its phylogenetic analysis Open
The complete mitochondrial genome of Haemadipsa tianmushana Song 1977 from China has been determined and reported for the first time in this study. It was 14,625 bp in length and consisted of 22 tRNA genes, 2 rRNA genes, 13 protein-…
View article: Biological Ingredient Analysis of Traditional Herbal Patent Medicine Fuke Desheng Wan Using the Shotgun Metabarcoding Approach
Biological Ingredient Analysis of Traditional Herbal Patent Medicine Fuke Desheng Wan Using the Shotgun Metabarcoding Approach Open
With the widespread use of traditional medicine around the world, the safety and efficacy of traditional herbal patent medicine have become an increasing concern to the public. However, it is difficult to supervise the authenticity of herb…
View article: The complete chloroplast genome of <i>Atractylodes japonica</i> Koidz. ex Kitam. and its phylogenetic inference
The complete chloroplast genome of <i>Atractylodes japonica</i> Koidz. ex Kitam. and its phylogenetic inference Open
Atractylodes japonica Koidz. ex Kitam. is a perennial herbal plant, and its dried rhizomes have been widely used as traditional medicine in China and Japan. In this study, we assembled and annotated the complete chloroplast (cp) gen…
View article: The complete chloroplast genome of <i>Atractylodes koreana</i> (Nakai) Kitam and its phylogenetic analysis
The complete chloroplast genome of <i>Atractylodes koreana</i> (Nakai) Kitam and its phylogenetic analysis Open
Atractylodes koreana (Nakai) Kitam is a perennial herb of Asteraceae, mainly distributed in China and Korea, which is the main adulterant of traditional herbal medicine 'Cangzhu'. In the present study, we reported the complete chlor…
View article: Precise Species Detection in Traditional Herbal Patent Medicine, Qingguo Wan, Using Shotgun Metabarcoding
Precise Species Detection in Traditional Herbal Patent Medicine, Qingguo Wan, Using Shotgun Metabarcoding Open
As one of the high-incidence diseases in the world, pharyngitis seriously affects the lives of those with the condition. Qingguo Wan is a herbal medicine used for treating pharyngitis, and its quality evaluation is currently only accomplis…