G. Maslen
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View article: A high-quality reference genome and tissue expression atlas for the European lobster (<i>Homarus gammarus</i>)
A high-quality reference genome and tissue expression atlas for the European lobster (<i>Homarus gammarus</i>) Open
The European lobster ( Homarus gammarus ) and its sister species, the American lobster ( Homarus americanus ), are notable for their remarkable immunity and longevity, with lifespans reaching up to 80 years in the wild. A reference genome …
View article: Improved high quality sand fly assemblies enabled by ultra low input long read sequencing
Improved high quality sand fly assemblies enabled by ultra low input long read sequencing Open
Phlebotomine sand flies are the vectors of leishmaniasis, a neglected tropical disease. High-quality reference genomes are an important tool for understanding the biology and eco-evolutionary dynamics underpinning disease epidemiology. Pre…
View article: What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species
What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species Open
FungiDB (https://fungidb.org) serves as a valuable online resource that seamlessly integrates genomic and related large-scale data for a wide range of fungal and oomycete species. As an integral part of the VEuPathDB Bioinformatics Resourc…
View article: <i>In silico</i> prediction of candidate gene targets for the management of African cassava whitefly (<i>Bemisia tabaci</i>, SSA1-SG1), a key vector of viruses causing cassava brown streak disease
<i>In silico</i> prediction of candidate gene targets for the management of African cassava whitefly (<i>Bemisia tabaci</i>, SSA1-SG1), a key vector of viruses causing cassava brown streak disease Open
Whiteflies ( Bemisia tabaci sensu lato) have a wide host range and are globally important agricultural pests. In Sub-Saharan Africa, they vector viruses that cause two ongoing disease epidemics: cassava brown streak disease and cassava mos…
View article: Ensembl 2024
Ensembl 2024 Open
Ensembl (https://www.ensembl.org) is a freely available genomic resource that has produced high-quality annotations, tools, and services for vertebrates and model organisms for more than two decades. In recent years, there has been a drama…
View article: VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023 Open
The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) is a Bioinformatics Resource Center funded by the National Institutes of Health with additional funding from the Wellcome Trust. VEuPathDB sup…
View article: Recommendations for extending the GFF3 specification for improved interoperability of genomic data
Recommendations for extending the GFF3 specification for improved interoperability of genomic data Open
The GFF3 format is a common, flexible tab-delimited format representing the structure and function of genes or other mapped features (https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md). However, with increasing re…
View article: Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates Open
Ensembl Genomes (https://www.ensemblgenomes.org) provides access to non-vertebrate genomes and analysis complementing vertebrate resources developed by the Ensembl project (https://www.ensembl.org). The two resources collectively present g…
View article: VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center Open
The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the EuPathDB projects. As a Bioinformatics Resource Center funded by the National Institutes of …
View article: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Background The stable fly, Stomoxys calcitrans , is a major blood-feeding pest of livestock that has near worldwide distribution, causing an annual cost of over $2 billion for control and product loss in the USA alone. Control of these fli…
View article: Additional file 4 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 4 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 4. Output from RNA-Seq Dataset Analyses.
View article: Additional file 8 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 8 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 8. Stomoxys chemosensory gene family member amino acid sequences.
View article: Additional file 15 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 15 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 15. Stomoxys transcription factor expression analysis.
View article: Additional file 14 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 14 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 14. Stomoxys cytochrome P450 amino acid sequences.
View article: Additional file 11 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 11 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 11. Stomoxys salivary gland RNA-Seq analysis output.
View article: Additional file 2 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 2 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 2. Functional annotation of transcripts assembled from the Stomoxys genome and output from g:Profiler analysis.
View article: Additional file 3 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 3 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 3. Output from analysis of core CEGMA proteins in the Stomoxys genome.
View article: Additional file 12 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 12 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 12. Stomoxys metabolic detoxification gene family member amino acid sequences.
View article: Additional file 16 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 16 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 16. Prokaryote and eukaryote databases used for the lateral gene transfer prediction pipeline.
View article: Additional file 7 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 7 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 7. Stomoxys antimicrobial peptide amino acid sequences.
View article: Additional file 9 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 9 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 9. Stomoxys chemosensory gene family annotation and normalized RNA-Seq expression data.
View article: Additional file 5 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 5 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 5. Output from cluster analysis of 16S bacterial isolate sequencing.
View article: Additional file 13 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 13 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 13. Stomoxys cytochrome P450 gene family identification.
View article: Additional file 6 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 6 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 6. Stomoxys immune-related proteins identified by similarity to HMM profiles of Drosophila immune protein families and by manual annotation.
View article: Additional file 10 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control
Additional file 10 of The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control Open
Additional file 10. Stomoxys male reproductive tract-biased genes.
View article: MOESM2 of Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
MOESM2 of Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies Open
Additional file 2. Chromosome arm assignments. Lists of scaffold assignments to chromosome arms.
View article: MOESM6 of Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
MOESM6 of Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies Open
Additional file 6. Adjacency and superscaffold data. Reconciled sets of scaffold adjacencies and corresponding superscaffolds.