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View article: Database resources of the National Center for Biotechnology Information in 2026
Database resources of the National Center for Biotechnology Information in 2026 Open
The National Center for Biotechnology Information (NCBI) provides biomedical data resources including PubMed®, a repository of citations and abstracts published in life science journals, and ClinicalTrials.gov, a repository of clinical res…
View article: The evolution of dbSNP: 25 years of impact in genomic research
The evolution of dbSNP: 25 years of impact in genomic research Open
The Single Nucleotide Polymorphism Database (dbSNP), established in 1998 by the National Center for Biotechnology Information (NCBI), has been a critical resource in genomics for cataloging small genetic variations. Originally focused on s…
View article: Database resources of the National Center for Biotechnology Information
Database resources of the National Center for Biotechnology Information Open
The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science…
View article: Database resources of the National Center for Biotechnology Information in 2023
Database resources of the National Center for Biotechnology Information in 2023 Open
The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science…
View article: Database resources of the national center for biotechnology information
Database resources of the national center for biotechnology information Open
The National Center for Biotechnology Information (NCBI) produces a variety of online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in…
View article: Database resources of the National Center for Biotechnology Information
Database resources of the National Center for Biotechnology Information Open
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstra…
View article: Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine
Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine Open
In October 2019, 46 scientists from around the world participated in the first National Center for Biotechnology Information (NCBI) Structural Variation (SV) Codeathon at Baylor College of Medicine. The charge of this first annual working …
View article: Human sequence alignment data set used for analysis of SPDI algorithm and tools
Human sequence alignment data set used for analysis of SPDI algorithm and tools Open
Collection of alignment segments produced on October 30, 2019. The ADS currently consists of over 2,680,000 pairwise alignment segments generated from over 350,000 distinct input sequences. Old assembly to current Genome Reference Consorti…
View article: Human sequence alignment data set used for analysis of SPDI algorithm and tools
Human sequence alignment data set used for analysis of SPDI algorithm and tools Open
Collection of alignment segments produced on October 30, 2019. The ADS currently consists of over 2,680,000 pairwise alignment segments generated from over 350,000 distinct input sequences. Old assembly to current Genome Reference Consorti…
View article: Database resources of the National Center for Biotechnology Information
Database resources of the National Center for Biotechnology Information Open
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstrac…
View article: iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures Open
Motivation Build a web-based 3D molecular structure viewer focusing on interactive structural analysis. Results iCn3D (I-see-in-3D) can simultaneously show 3D structure, 2D molecular contacts and 1D protein and nucleotide sequences through…
View article: SPDI: Data Model for Variants and Applications at NCBI
SPDI: Data Model for Variants and Applications at NCBI Open
Motivation Normalizing diverse representations of sequence variants is critical to the elucidation of the genetic basis of disease and biological function. NCBI has long wrestled with integrating data from multiple submitters to build data…
View article: iCn3D, a Web-based 3D Viewer for Sharing 1D/2D/3D Representations of Biomolecular Structures
iCn3D, a Web-based 3D Viewer for Sharing 1D/2D/3D Representations of Biomolecular Structures Open
Summary iCn3D (I-see-in-3D) is a web-based 3D molecular structure viewer focusing on the interactive structural analysis. It can simultaneously show 3D structure, 2D molecular contacts, and 1D protein and nucleotide sequences through an in…
View article: Database resources of the National Center for Biotechnology Information
Database resources of the National Center for Biotechnology Information Open
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstrac…
View article: LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC Open
The identification and interpretation of genomic variants play a key role in the diagnosis of genetic diseases and related research. These tasks increasingly rely on accessing relevant manually curated information from domain databases (e.…
View article: Database resources of the National Center for Biotechnology Information
Database resources of the National Center for Biotechnology Information Open
The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstrac…
View article: tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine
tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine Open
Motivation Despite significant efforts in expert curation, clinical relevance about most of the 154 million dbSNP reference variants (RS) remains unknown. However, a wealth of knowledge about the variant biological function/disease impact …
View article: dbVar structural variant cluster set for data analysis and variant comparison
dbVar structural variant cluster set for data analysis and variant comparison Open
dbVar houses over 3 million submitted structural variants (SSV) from 120 human studies including copy number variations (CNV), insertions, deletions, inversions, translocations, and complex chromosomal rearrangements. Users can submit mult…
View article: Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites
Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites Open
Motivation Genetic variants in drug targets and metabolizing enzymes often have important functional implications, including altering the efficacy and toxicity of drugs. Identifying single nucleotide variants (SNVs) that contribute to diff…
View article: dbVar structural variant cluster set for data analysis and variant comparison
dbVar structural variant cluster set for data analysis and variant comparison Open
dbVar houses over 3 million submitted structural variants (SSV) from 120 human studies including copy number variations (CNV), insertions, deletions, inversions, translocations, and complex chromosomal rearrangements. Users can submit mult…