Loren Hauser
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View article: Toward robust surgical phase recognition via deep ensemble learning
Toward robust surgical phase recognition via deep ensemble learning Open
Purpose Automatic recognition of surgical workflows is a complex yet essential task of context-aware systems in the operating room. However, achieving high accuracy in phase recognition remains a challenge due to the complexity of surgical…
View article: Adaptive Ensemble Learning for Robust Surgical Phase Recognition
Adaptive Ensemble Learning for Robust Surgical Phase Recognition Open
Automatic recognition of surgical phases plays a critical role in enabling intelligent, context-aware support systems during operative procedures. The inherent variability of surgical techniques and intraoperative conditions makes precise …
View article: Numerical modelling of PLC effect induced flow figure formation during sheet metal forming of 5xxx aluminium alloys
Numerical modelling of PLC effect induced flow figure formation during sheet metal forming of 5xxx aluminium alloys Open
During sheet metal forming processes, 5xxx-AlMg(Mn) alloys tend to form flow figures due to the so-called Portevin-Le Chatelier effect (PLC effect). To date, this visually apparent phenomenon has prevented such 5xxx sheet materials from be…
View article: Screening assay to monitor mono-ADP-ribosylhydrolase activity of viral macrodomains in cells
Screening assay to monitor mono-ADP-ribosylhydrolase activity of viral macrodomains in cells Open
Mono-ADP-ribosylation, a regulatory modification of both protein and nucleic acids, has been implicated in innate immunity. In cells, this modification is catalyzed by PARP enzymes, some of which are induced in response to interferons. Mon…
View article: Investigations on strain rate dependent forming limits of 5xxx aluminium alloys for flow-line-free sheet metal forming
Investigations on strain rate dependent forming limits of 5xxx aluminium alloys for flow-line-free sheet metal forming Open
5xxx-AlMg(Mn) sheet metal alloys reveal a tendency to form flow lines during their forming process, known as the Portevin-Le Chatêlier effect (PLC effect). This phenomenon currently prevents these alloys from being used for the production …
View article: Biological consequences of ancient gene acquisition and duplication in the large genome soil bacterium, "solibacter usitatus" strain Ellin6076
Biological consequences of ancient gene acquisition and duplication in the large genome soil bacterium, "solibacter usitatus" strain Ellin6076 Open
Bacterial genome sizes range from ca. 0.5 to 10Mb and are influenced by gene duplication, horizontal gene transfer, gene loss and other evolutionary processes. Sequenced genomes of strains in the phylum Acidobacteria revealed that 'Solibac…
View article: Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data
Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data Open
We present a novel approach for rapidly identifying sequences that leverages the representational power of Deep Learning techniques and is applied to the analysis of microbiome data. The method involves the creation of a latent sequence sp…
View article: Complete genome sequence of <em>Syntrophobotulus glycolicus</em> type strain (FlGlyR<sup>T</sup>).
Complete genome sequence of <em>Syntrophobotulus glycolicus</em> type strain (FlGlyR<sup>T</sup>). Open
Syntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced…
View article: Differential gene expression and the importance of regulatory ncRNAs in acidophilic microorganisms
Differential gene expression and the importance of regulatory ncRNAs in acidophilic microorganisms Open
Gene expression profiles provide insight into how microorganisms respond to changing environmental conditions. However, few studies have integrated expression profile analyses of both coding genes and non-coding RNAs (ncRNAs) to characteri…
View article: Additional file 2: of Assessment of genome annotation using gene function similarity within the gene neighborhood
Additional file 2: of Assessment of genome annotation using gene function similarity within the gene neighborhood Open
Cthermocellum_oldannotation.txt. The old annotation of C. thermocellum. (TXT 364Â kb)
View article: Complete Genome Sequence of <i>Alkaliphilus metalliredigens</i> Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds
Complete Genome Sequence of <i>Alkaliphilus metalliredigens</i> Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds Open
Alkaliphilus metalliredigens strain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylum Firmicutes . QYMF was isolated from alkaline borax leachate ponds. The genome sequence will help elucidate the role…
View article: Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets
Replicates, Read Numbers, and Other Important Experimental Design Considerations for Microbial RNA-seq Identified Using Bacillus thuringiensis Datasets Open
RNA-seq is being used increasingly for gene expression studies and it is revolutionizing the fields of genomics and transcriptomics. However, the field of RNA-seq analysis is still evolving. Therefore, we specifically designed this study t…
View article: Erratum to: Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park
Erratum to: Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park Open
After publication of this study [1], the authors noticed that GenBank accession number is incorrect. The correct GenBank accession number is CP002442.