Lorenzo Casbarra
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View article: Testing the limits of short-reads metagenomic classifications programs in wastewater treating microbial communities
Testing the limits of short-reads metagenomic classifications programs in wastewater treating microbial communities Open
View article: CircoTax: a novel circular representation of differentially abundant microbial ranks
CircoTax: a novel circular representation of differentially abundant microbial ranks Open
One of the most relevant and widely used applications of NGS-based microbial abundance analysis is the discovery of taxa that appear as differentially represented between ecological niches. In the last 10 years several methods have been pr…
View article: Human DNA hijacking microbiota surveys: causes and consequences in colon related 16s rRNA amplicon sequencing
Human DNA hijacking microbiota surveys: causes and consequences in colon related 16s rRNA amplicon sequencing Open
The efficiency of polymerase chain reaction (PCR) decreases under suboptimal conditions, such as low template concentration combined with high concentrations of similar sequences. Under these circumstances, mis-priming can occur, leading t…
View article: Evaluation of biomass conservation impact on wastewater-treating microbial communities using 16S rRNA gene sequencing
Evaluation of biomass conservation impact on wastewater-treating microbial communities using 16S rRNA gene sequencing Open
View article: Adaptation of Commensal Escherichia coli in Tomato Fruits: Motility, Stress, Virulence
Adaptation of Commensal Escherichia coli in Tomato Fruits: Motility, Stress, Virulence Open
Food contamination can be a serious concern for public health because it can be related to the severe spreading of pathogens. This is a main issue, especially in the case of fresh fruits and vegetables; indeed, they have often been associa…
View article: Binding free energy predictions in host-guest systems using Autodock4. A retrospective analysis on SAMPL6, SAMPL7 and SAMPL8 challenges
Binding free energy predictions in host-guest systems using Autodock4. A retrospective analysis on SAMPL6, SAMPL7 and SAMPL8 challenges Open