Luc Dantan
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View article: Bacteria with antibacterial activities isolated from <i>Magallana gigas</i> microbiota as potential probiotics against <i>Vibrio aestuarianus</i> infections in oyster farming
Bacteria with antibacterial activities isolated from <i>Magallana gigas</i> microbiota as potential probiotics against <i>Vibrio aestuarianus</i> infections in oyster farming Open
Introduction Oyster farming is a significant industry worldwide, but it is threatened by various diseases such as Pacific Oyster Mortality Syndrome or vibriosis. V. aestuarianus is a major cause of mortality for market-size oysters, result…
View article: Microbial education plays a crucial role in harnessing the beneficial properties of microbiota for infectious disease protection in<i>Crassostrea gigas</i>
Microbial education plays a crucial role in harnessing the beneficial properties of microbiota for infectious disease protection in<i>Crassostrea gigas</i> Open
Background Recently, the frequency and severity of marine diseases have increased in association with global changes, and molluscs of economic interest are particularly concerned. Among them, the Pacific oyster ( Crassostrea gigas ) produc…
View article: Cross-talk and mutual shaping between the immune system and the microbiota during an oyster's life
Cross-talk and mutual shaping between the immune system and the microbiota during an oyster's life Open
The Pacific oyster Crassostrea gigas lives in microbe-rich marine coastal systems subjected to rapid environmental changes. It harbours a diversified and fluctuating microbiota that cohabits with immune cells expressing a diversified immun…
View article: Microbial education for marine invertebrate disease prevention in aquaculture
Microbial education for marine invertebrate disease prevention in aquaculture Open
The holobiont theory expands the notion of individual multicellular organisms as a community composed of a host and all its associated microorganisms. This concept has been extensively studied in the field of aquaculture, where increasing …
View article: Caractérisation des effets bénéfiques de la microflore naturelle de l'huître du Pacifique Crassostrea gigas en vue d'applications en conchyliculture
Caractérisation des effets bénéfiques de la microflore naturelle de l'huître du Pacifique Crassostrea gigas en vue d'applications en conchyliculture Open
Recently, the frequency and severity of marine diseases have increased in association with global changes, andmollusks of economic interest are particularly concerned. A striking example of a devastating disease is the Pacific Oyster Morta…
View article: Functional Diversification of Oyster Big Defensins Generates Antimicrobial Specificity and Synergy against Members of the Microbiota
Functional Diversification of Oyster Big Defensins Generates Antimicrobial Specificity and Synergy against Members of the Microbiota Open
Big defensins are two-domain antimicrobial peptides (AMPs) that have highly diversified in mollusks. Cg-BigDefs are expressed by immune cells in the oyster Crassostrea gigas, and their expression is dampened during the Pacific Oyster Morta…
View article: Additional file 5 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 5 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 5. Results of two differential analyses comparing the proportion of OTUs: (1) ME exposed oysters vs control oysters and (2) ME water vs. control water.
View article: Additional file 9 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 9 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 9. Compilation of differentially methylated regions in any regions of the genomes (DMRs), within gene bodies (DMGs), within promoter regions (DMPs).
View article: Additional file 8 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 8 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 8. Compilation the differentially expressed genes related to metabolic functions at the time point indicated.
View article: Additional file 4 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 4 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 4. OTU tables for 16S barcoding analysis. Each sheet correspond to a different time point. This sheet also includes the results of LEfSe analysis and compiles the taxa which are statistically significantly enriched in the m…
View article: Additional file 11 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 11 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 11. Details for the statistical analysis performed to adress the significance of the inheritence in DMRs patterns.
View article: Additional file 10 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 10 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 10. Compilation the RBGOA biological functions which are significantly enriched in the epigenomic dataset for each time point (sheet 1 to 4) and comparison with RBGOA function from the transcriptomic data.
View article: Additional file 2 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 2 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 2. Quality of the metrics for omic analysis (sheet 1: transcriptomic, sheet 2: genetic, sheet 3: epigenomic).
View article: Additional file 6 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 6 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 6. Compilation of differentially expressed genes at the time point indicated (All DEGs = all the differentially expressed genes, Other sheets = Immune related genes).
View article: Additional file 7 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection
Additional file 7 of Early life microbial exposures shape the Crassostrea gigas immune system for lifelong and intergenerational disease protection Open
Additional file 7. Compilation of the RBGOA biological function which are significantly enriched in the transcriptomic dataset for each time point.
View article: Comparative Analysis of Fecal Microbiomes From Wild Waterbirds to Poultry, Cattle, Pigs, and Wastewater Treatment Plants for a Microbial Source Tracking Approach
Comparative Analysis of Fecal Microbiomes From Wild Waterbirds to Poultry, Cattle, Pigs, and Wastewater Treatment Plants for a Microbial Source Tracking Approach Open
Fecal pollution in coastal areas is of a high concern since it affects bathing and shellfish harvesting activities. Wild waterbirds are non-negligible in the overall signal of the detectable pollution. Yet, studies on wild waterbirds’ gut …