Luke C. Campillo
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View article: Temporal Genomics Reveal a Century of Genomic Diversity Shifts Across a Biodiversity Hotspot Avian Assemblage
Temporal Genomics Reveal a Century of Genomic Diversity Shifts Across a Biodiversity Hotspot Avian Assemblage Open
Biodiversity has experienced tremendous shifts in community, species, and genetic diversity during the Anthropocene. Understanding temporal diversity shifts is especially critical in biodiversity hotspots, i.e., regions that are exceptiona…
View article: Genomic differentiation in an endemic Philippine genus (Aves:<i>Sarcophanops</i>) owing to geographical isolation on recently disassociated islands
Genomic differentiation in an endemic Philippine genus (Aves:<i>Sarcophanops</i>) owing to geographical isolation on recently disassociated islands Open
Phylogeographical studies of Philippine vertebrates have demonstrated that genetic variation is broadly partitioned by Pleistocene island aggregation. Contemporary island discontinuity is expected to influence genetic differentiation but r…
View article: Model-based species delimitation: are coalescent species reproductively isolated?
Model-based species delimitation: are coalescent species reproductively isolated? Open
A large and growing fraction of systematists define species as independently evolving lineages that may be recognized by analyzing the population genetic history of alleles sampled from individuals belonging to those species. This has moti…
View article: Mitochondrial genomes of the bird genus <i>Piranga</i>: rates of sequence evolution, and discordance between mitochondrial and nuclear markers
Mitochondrial genomes of the bird genus <i>Piranga</i>: rates of sequence evolution, and discordance between mitochondrial and nuclear markers Open
We report the characteristics of the mitochondrial genomes of 22 individuals in the bird genus Piranga, including all currently recognized species in the genus (n = 11). Elements follow the standard avian mitogenome series, i…
View article: Genomic differentiation in an endemic Philippine genus (Aves: <i>Sarcophanops</i> ) due to geographic isolation on recently disassociated islands
Genomic differentiation in an endemic Philippine genus (Aves: <i>Sarcophanops</i> ) due to geographic isolation on recently disassociated islands Open
Phylogeographic studies of Philippine vertebrates have demonstrated that genetic variation is broadly partitioned by Pleistocene island aggregation. Contemporary island discontinuity is expected to influence genetic differentiation, but re…
View article: Genomic differentiation in an endemic Philippine genus (Aves: <i>Sarcophanops</i>) due to geographic isolation on recently disassociated islands
Genomic differentiation in an endemic Philippine genus (Aves: <i>Sarcophanops</i>) due to geographic isolation on recently disassociated islands Open
Phylogeographic studies of Philippine vertebrates have demonstrated that genetic variation is broadly partitioned by Pleistocene island aggregation. Contemporary island discontinuity is expected to influence genetic differentiation, but re…
View article: Piranga mtDNA phylip files
Piranga mtDNA phylip files Open
There are the phylip files used for analysis in our Piranga mitogenome project
View article: Piranga mtDNA gene trees
Piranga mtDNA gene trees Open
Nexus files containing a gene tree for each mtDNA gene. These were the trees used for ASTRAL-II analysis.
View article: Piranga mtDNA gene trees
Piranga mtDNA gene trees Open
Nexus files containing a gene tree for each mtDNA gene. These were the trees used for ASTRAL-II analysis.
View article: Piranga mtDNA gene trees
Piranga mtDNA gene trees Open
Gene tree files, produced in RAxML (GTRGAMMA, 200 rapid BS).
View article: Use of genomic data to resolve gene tree discordance in a Southeast Asian genus: Readdressing paraphyly in the spiderhunter (Nectariniidae, Arachnothera) phylogeny
Use of genomic data to resolve gene tree discordance in a Southeast Asian genus: Readdressing paraphyly in the spiderhunter (Nectariniidae, Arachnothera) phylogeny Open
Reduced representation genomic sequencing methods provide a fast and relatively inexpensive way to gather sequence data from thousands of loci throughout the genome. These data can be used to test previous phylogenetic hypotheses produced …
View article: Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus:<i>Piranga</i>)
Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus:<i>Piranga</i>) Open
Restriction-site associated DNA sequencing (RAD-seq) and target capture of specific genomic regions, such as ultraconserved elements (UCEs), are emerging as two of the most popular methods for phylogenomics using reduced-representation gen…
View article: Avian evolution and speciation in the Southeast Asian tropics
Avian evolution and speciation in the Southeast Asian tropics Open
View article: Comparative phylogeography and niche modeling for three species complexes of SE China (Paradoxornis spp., Pycnonotus spp., Spizixos spp.)
Comparative phylogeography and niche modeling for three species complexes of SE China (Paradoxornis spp., Pycnonotus spp., Spizixos spp.) Open
Contrasting multiple organisms with similar contemporary distributions, researchers can identify shared evolutionary patterns and provide historical context for community composition. We used three species complexes with overlapping distri…