Miguel Á. Vega-Rodríguez
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View article: A swarm-based multi-objective approach for sentiment-oriented generic summarization: application to tweets
A swarm-based multi-objective approach for sentiment-oriented generic summarization: application to tweets Open
Nowadays, automatic text summarization task is a matter that has acquired special relevance in numerous contexts. Particularly, sentiment analysis and opinion mining need summarization methods to quickly analyze public opinion about any ev…
View article: Multi-threaded SIMD strategies and frequency scaling for sustainable evolutionary biology
Multi-threaded SIMD strategies and frequency scaling for sustainable evolutionary biology Open
In the pursuit of sustainable computational approaches, research on parallel computing has been progressively orienting efforts towards the definition of energy-aware methodologies to solve real-world problems. A commonly adopted approach …
View article: Reference Vector-guided Evolutionary Algorithm for cluster analysis of single-cell transcriptomes
Reference Vector-guided Evolutionary Algorithm for cluster analysis of single-cell transcriptomes Open
The results highlight that RVEA-CAST is an effective and versatile approach for clustering scRNA-seq data, outperforming existing methods across diverse biological scenarios in both widely used clustering evaluation metrics and biological …
View article: A keyword extraction model study in the movie domain with synopsis and reviews
A keyword extraction model study in the movie domain with synopsis and reviews Open
The use of keywords is increasingly being applied across diverse domains, including the movie industry, whose main platforms are adopting advanced natural language processing techniques. Algorithms for automatic extraction of keywords can …
View article: <i>SocialViruses</i>: integrating quantitative phage–bacteria and phage–phage interaction networks for rational cocktail design
<i>SocialViruses</i>: integrating quantitative phage–bacteria and phage–phage interaction networks for rational cocktail design Open
Motivation Phage therapy is emerging as a promising alternative to antibiotics in biomedical research, highlighting the growing need for computational tools to rationally design effective phage cocktails. However, its clinical potential is…
View article: An indicator-based multi-objective variable neighborhood search approach for query-focused summarization
An indicator-based multi-objective variable neighborhood search approach for query-focused summarization Open
Currently, automatic multi-document summarization is an interesting subject in numerous fields of study. As a part of it, query-focused summarization is becoming increasingly important in recent times. These methods can automatically produ…
View article: A protein-protein interaction network aligner study in the multi-objective domain
A protein-protein interaction network aligner study in the multi-objective domain Open
The use of the SANA aligner is recommended for obtaining the best alignments of topological quality, BEAMS for alignments of the best biological quality, and SAlign for alignments of the best combined topological and biological quality. Si…
View article: Automatic assignment of microgenres to movies using a word embedding-based approach
Automatic assignment of microgenres to movies using a word embedding-based approach Open
Streaming services are increasingly leveraging Artificial Intelligence (AI) technologies for improved content cataloging, user experiences in content discovery, and personalization. A significant challenge in this domain is the automated a…
View article: Solving the RNA inverse folding problem through target structure decomposition and Multiobjective Evolutionary Computation
Solving the RNA inverse folding problem through target structure decomposition and Multiobjective Evolutionary Computation Open
The RNA inverse folding problem involves discovering a nucleotide sequence that folds into a desired target structure. Although numerous computational methods have been proposed over the years to tackle the problem, none have successfully …
View article: Algorithms for Computational Biology: Eighth Edition
Algorithms for Computational Biology: Eighth Edition Open
This special section of IEEE/ACM Transactions on Computational Biology and Bioinformatics presents extended versions of some of the best papers accepted at the Eighth International Conference on Algorithms for Computational Biology, AlCoB …
View article: A multi-objective butterfly optimization algorithm for protein encoding
A multi-objective butterfly optimization algorithm for protein encoding Open
La integración de múltiples genes para maximizar los niveles de expresión de las proteínas representa un desafío importante en la biología sintética. Esta tarea se basa en la definición de múltiples secuencias codificadoras de proteínas, q…
View article: Automatic Update Summarization by a Multiobjective Number-One-Selection Genetic Approach
Automatic Update Summarization by a Multiobjective Number-One-Selection Genetic Approach Open
Actualmente, el explosivo crecimiento de la información disponible en Internet hace que los sistemas automáticos de resumen de textos sean cada vez más importantes. Un desafío particularmente relevante es la tarea de resumen de actualizaci…
View article: PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks
PhageCocktail: An R package to design phage cocktails from experimental phage-bacteria infection networks Open
The larger the phage-bacteria infection network is, the more complex its analysis is. Thus, this tool eases this task for scientists and other users while designing phage cocktails of good quality. This R package includes four different me…
View article: Systematic analysis of putative phage-phage interactions on minimum-sized phage cocktails
Systematic analysis of putative phage-phage interactions on minimum-sized phage cocktails Open
The application of bacteriophages as antibacterial agents has many benefits in the “post-antibiotic age”. To increase the number of successfully targeted bacterial strains, phage cocktails, instead of a single phage, are commonly formulate…