Neeraja M. Krishnan
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View article: Fruit-In-Sight: A deep learning-based framework for secondary metabolite class prediction using fruit and leaf images
Fruit-In-Sight: A deep learning-based framework for secondary metabolite class prediction using fruit and leaf images Open
Fruits produce a wide variety of secondary metabolites of great economic value. Analytical measurement of the metabolites is tedious, time-consuming, and expensive. Additionally, metabolite concentrations vary greatly from tree to tree, ma…
View article: Supplementary Table 8 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 8 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 8 shows the Genes included in qPCR validation.
View article: Supplementary Figure 4 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Figure 4 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Figure 4 shows the ClueGO Gene Ontology analysis for 85 genes de-regulated in both patient-specific analysis and replicate analysis for breast cancer RNA-Seq data.
View article: Supplementary Table 3 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 3 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 3 shows the Hallmarks, Canonical Pathways, and Gene Ontologies with FDR q-value <0.05 enriched in MSigDB for significantly de-regulated genes in each comparison (AvB, BvC and AvC) in individual patient time-series analy…
View article: Supplementary Figure 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Figure 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Figure 2 shows unsupervised clustering of Breast Cancer patients based on genome-wide expression counts.
View article: Supplementary Table 7 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 7 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 7 shows Genes de-regulated between various time-points during surgery in HNSCC Microarray data.
View article: Supplementary Table 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 2 shows the 4854 unique genes found to be de-regulated in any one comparison across all comparisons for AvB, BvC and AvC in for breast cancer individual patient specific RNA-Seq analysis.
View article: Supplementary Figure 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Figure 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Figure 1 shows the effect of various transformation methods on RNA-Seq data from breast cancer patients.
View article: Supplementary Table 7 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 7 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 7 shows Genes de-regulated between various time-points during surgery in HNSCC Microarray data.
View article: Supplementary Figure 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Figure 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Figure 2 shows unsupervised clustering of Breast Cancer patients based on genome-wide expression counts.
View article: Supplementary Table 5 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 5 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 5 shows the GO terms for 85 significantly de-regulated genes common to the individual patient time-series analysis and replicative analysis in Breast Cancer Patients.
View article: Supplementary Materials and Methods from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Materials and Methods from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Materials and Methods
View article: Data from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Data from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Surgery exposes tumor tissue to severe hypoxia and mechanical stress leading to rapid gene expression changes in the tumor and its microenvironment, which remain poorly characterized. We biopsied tumor and adjacent normal tissues from pati…
View article: Supplementary Table 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 1 shows the Breast cancer patient assay distribution and clinical info
View article: Supplementary Table 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 1 shows the Breast cancer patient assay distribution and clinical info
View article: Supplementary Table 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 2 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 2 shows the 4854 unique genes found to be de-regulated in any one comparison across all comparisons for AvB, BvC and AvC in for breast cancer individual patient specific RNA-Seq analysis.
View article: Supplementary Figure 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Figure 1 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Figure 1 shows the effect of various transformation methods on RNA-Seq data from breast cancer patients.
View article: Supplementary Table 4 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 4 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 4 shows Genes deregulated in replicate analysis for breast cancer patients with their log-fold change values.
View article: Supplementary Table 6 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 6 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 6 shows the Clinical characteristics of CA HNSCC patients. All staging was done using AJCC 7th edition of the Oral cavity cancer staging systems.
View article: Supplementary Figure 5 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Figure 5 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Figure shows Venn diagram representation & heatmap for time-series microarray-based gene expression comparison between tumor-adjacent normal tissue at the start of surgery & tumor tissue obtained at various timepoints in head…
View article: Supplementary Figure 5 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Figure 5 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Figure shows Venn diagram representation & heatmap for time-series microarray-based gene expression comparison between tumor-adjacent normal tissue at the start of surgery & tumor tissue obtained at various timepoints in head…
View article: Supplementary Table 11 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 11 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 11 shows Overlap of genes de-regulated from our study with genes known to be de-regulated due to hypoxia in literature.
View article: Supplementary Table 8 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 8 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 8 shows the Genes included in qPCR validation.
View article: Supplementary Table 4 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 4 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 4 shows Genes deregulated in replicate analysis for breast cancer patients with their log-fold change values.
View article: Supplementary Table 11 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 11 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 11 shows Overlap of genes de-regulated from our study with genes known to be de-regulated due to hypoxia in literature.
View article: Supplementary Table 6 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 6 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 6 shows the Clinical characteristics of CA HNSCC patients. All staging was done using AJCC 7th edition of the Oral cavity cancer staging systems.
View article: Supplementary Materials and Methods from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Materials and Methods from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Materials and Methods
View article: Data from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Data from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Surgery exposes tumor tissue to severe hypoxia and mechanical stress leading to rapid gene expression changes in the tumor and its microenvironment, which remain poorly characterized. We biopsied tumor and adjacent normal tissues from pati…
View article: Supplementary Table 10 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 10 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 10 shows Genes de-regulated between normal at start of surgery and tumour tissues at differing points of surgery in HNSCC Microarray data.
View article: Supplementary Table 10 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment
Supplementary Table 10 from Surgical Tumor Resection Deregulates Hallmarks of Cancer in Resected Tissue and the Surrounding Microenvironment Open
Supplementary Table 10 shows Genes de-regulated between normal at start of surgery and tumour tissues at differing points of surgery in HNSCC Microarray data.