Manu Agarwal
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View article: Comparative transcriptomics of a generalist aphid, Myzus persicae and a specialist aphid, Lipaphis erysimi reveals molecular signatures associated with diversity of their feeding behaviour and other attributes
Comparative transcriptomics of a generalist aphid, Myzus persicae and a specialist aphid, Lipaphis erysimi reveals molecular signatures associated with diversity of their feeding behaviour and other attributes Open
Introduction Aphids are phloem sap-sucking insects and are a serious destructive pest of several crop plants. Aphids are categorized as “generalists” or “specialists” depending on their host range. Myzus persicae (Sulz.) is a generalist ap…
View article: Tetraspanin 5 orchestrates resilience to salt stress through the regulation of ion and reactive oxygen species homeostasis in rice
Tetraspanin 5 orchestrates resilience to salt stress through the regulation of ion and reactive oxygen species homeostasis in rice Open
Summary Tetraspanins (TETs) are integral membrane proteins, characterized by four transmembrane domains and a unique signature motif in their large extracellular loop. They form dynamic supramolecular complexes called tetraspanin‐enriched …
View article: De Novo Transcriptome Profiling of Mustard Aphid (Lipaphis erysimi) and Differential Expression of Transcripts Associated with Feeding and Non-Feeding Conditions and Developmental Stages
De Novo Transcriptome Profiling of Mustard Aphid (Lipaphis erysimi) and Differential Expression of Transcripts Associated with Feeding and Non-Feeding Conditions and Developmental Stages Open
Lipaphis erysimi is a specialist aphid of the Indian subcontinent that causes significant yield losses in oilseed Brassicas. Several aphid genes have been used as preferred targets in RNAi-based transgenic plants for aphid resistance. In o…
View article: Use of hydroponics-based evaluation for phenotyping tolerance/susceptibility to the aphid, Uroleucon compositae and inheritance analysis of aphid tolerance in a global germplasm collection of Carthamus tinctorius L. (Safflower)
Use of hydroponics-based evaluation for phenotyping tolerance/susceptibility to the aphid, Uroleucon compositae and inheritance analysis of aphid tolerance in a global germplasm collection of Carthamus tinctorius L. (Safflower) Open
View article: Genome-wide identification, characterization, and expression analysis unveil the roles of pseudouridine synthase (PUS) family proteins in rice development and stress response
Genome-wide identification, characterization, and expression analysis unveil the roles of pseudouridine synthase (PUS) family proteins in rice development and stress response Open
View article: Meta-QTL and haplo-pheno analysis reveal superior haplotype combinations associated with low grain chalkiness under high temperature in rice
Meta-QTL and haplo-pheno analysis reveal superior haplotype combinations associated with low grain chalkiness under high temperature in rice Open
Chalk, an undesirable grain quality trait in rice, is primarily formed due to high temperatures during the grain-filling process. Owing to the disordered starch granule structure, air spaces and low amylose content, chalky grains are easil…
View article: Corrigendum: Integrated transcriptomics and miRNAomics provide insights into the complex multi-tiered regulatory networks associated with coleoptile senescence in rice
Corrigendum: Integrated transcriptomics and miRNAomics provide insights into the complex multi-tiered regulatory networks associated with coleoptile senescence in rice Open
[This corrects the article DOI: 10.3389/fpls.2022.985402.].
View article: Integrated transcriptomics and miRNAomics provide insights into the complex multi-tiered regulatory networks associated with coleoptile senescence in rice
Integrated transcriptomics and miRNAomics provide insights into the complex multi-tiered regulatory networks associated with coleoptile senescence in rice Open
Coleoptile is the small conical, short-lived, sheath-like organ that safeguards the first leaf and shoot apex in cereals. It is also the first leaf-like organ to senesce that provides nutrition to the developing shoot and is, therefore, be…
View article: Know when and how to die: gaining insights into the molecular regulation of leaf senescence
Know when and how to die: gaining insights into the molecular regulation of leaf senescence Open
View article: Long‐read‐based draft genome sequence of Indian black gram IPU‐94‐1 ‘Uttara’: Insights into disease resistance and seed storage protein genes
Long‐read‐based draft genome sequence of Indian black gram IPU‐94‐1 ‘Uttara’: Insights into disease resistance and seed storage protein genes Open
Black gram [ Vigna mungo (L.) Hepper var. mungo ] is a warm‐season legume highly prized for its protein content along with significant folate and iron proportions. To expedite the genetic enhancement of black gram, a high‐quality draft gen…
View article: Transcriptional and post-transcriptional regulation of young genes in plants
Transcriptional and post-transcriptional regulation of young genes in plants Open
Background New genes continuously emerge from non-coding DNA or by diverging from existing genes, but most of them are rapidly lost and only a few become fixed within the population. We hypothesized that young genes are subject to transcri…
View article: Contrasting Reproductive Strategies of Two Nymphaea Species Affect Existing Natural Genetic Diversity as Assessed by Microsatellite Markers: Implications for Conservation and Wetlands Restoration
Contrasting Reproductive Strategies of Two Nymphaea Species Affect Existing Natural Genetic Diversity as Assessed by Microsatellite Markers: Implications for Conservation and Wetlands Restoration Open
Nymphaea , commonly known as water lily, is the largest and most widely distributed genus in the order Nymphaeales. The importance of Nymphaea in wetland ecosystems and their increased vulnerability make them a great choice for conservatio…
View article: Additional file 2 of Transcriptional and post-transcriptional regulation of young genes in plants
Additional file 2 of Transcriptional and post-transcriptional regulation of young genes in plants Open
Additional file 2: NGS data. Table S1. Mapping percentage of FAIRE-seq and RNA-seq data. Table S2. Expression of young and old genes in rice seedlings.
View article: Transcriptional and post-transcriptional regulation of young genes in plants
Transcriptional and post-transcriptional regulation of young genes in plants Open
New genes continuously emerge from non-coding DNA or by diverging from existing genes, but most of them are rapidly lost and only a few become fixed within the population. We hypothesized that young genes are subject to transcriptional and…
View article: Abiotic stress-mediated modulation of the chromatin landscape in Arabidopsis thaliana
Abiotic stress-mediated modulation of the chromatin landscape in Arabidopsis thaliana Open
Limited information is available on abiotic stress-mediated alterations of chromatin conformation influencing gene expression in plants. In order to characterize the effect of abiotic stresses on changes in chromatin conformation, we emplo…
View article: Abiotic stress mediated modulation of chromatin landscape in Arabidopsis thaliana
Abiotic stress mediated modulation of chromatin landscape in Arabidopsis thaliana Open
This dataset include figures and supplementary material for the manuscript entitled "Abiotic stress mediated modulation of chromatin landscape in Arabidopsis thaliana" to be published in Journal of Experimental Bo…
View article: Abiotic stress mediated modulation of chromatin landscape in Arabidopsis thaliana
Abiotic stress mediated modulation of chromatin landscape in Arabidopsis thaliana Open
This dataset include figures and supplementary material for the manuscript entitled "Abiotic stress mediated modulation of chromatin landscape in Arabidopsis thaliana" to be published in Journal of Experimental Bo…
View article: <i>De novo</i>transcriptome profiling of mustard aphid (<i>Lipaphis erysimi</i>) and differential expression of transcripts associated with developmental stages, feeding and non-feeding conditions
<i>De novo</i>transcriptome profiling of mustard aphid (<i>Lipaphis erysimi</i>) and differential expression of transcripts associated with developmental stages, feeding and non-feeding conditions Open
Lipaphis erysimi is a Brassicaceae specialist aphid, which causes significant losses in yield and/or reduction of oil content of vegetable and oilseed brassicas and is a major pest in the Indian subcontinent. This study reports the de novo…
View article: Association Mapping for Important Agronomic Traits in Safflower (Carthamus tinctorius L.) Core Collection Using Microsatellite Markers
Association Mapping for Important Agronomic Traits in Safflower (Carthamus tinctorius L.) Core Collection Using Microsatellite Markers Open
Carthamus tinctorius L. (safflower) is an important oilseed crop producing seed oil rich in unsaturated fatty acids. Scarcity of identified marker-trait associations is a major limitation toward development of successful marker-assi…
View article: Standardization of Hydroponics based procedure for High-Throughput Screening and its Application for identification of differential host response in Safflower against <i>Fusarium oxysporum carthamii.</i>
Standardization of Hydroponics based procedure for High-Throughput Screening and its Application for identification of differential host response in Safflower against <i>Fusarium oxysporum carthamii.</i> Open
View article: Genome-wide identification and characterization of miRNAome from tomato (Solanum lycopersicum) roots and root-knot nematode (Meloidogyne incognita) during susceptible interaction
Genome-wide identification and characterization of miRNAome from tomato (Solanum lycopersicum) roots and root-knot nematode (Meloidogyne incognita) during susceptible interaction Open
Root-knot nematodes (RKNs, Meloidogyne spp.) are the most damaging plant parasites causing severe losses to crop production. The present study reports genome-wide identification and characterization of both tomato and RKN miRNAs simultaneo…
View article: Transcriptome analysis of root‐knot nematode ( <i>Meloidogyne incognita</i> )‐infected tomato ( <i>Solanum lycopersicum</i> ) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses
Transcriptome analysis of root‐knot nematode ( <i>Meloidogyne incognita</i> )‐infected tomato ( <i>Solanum lycopersicum</i> ) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses Open
Summary Root‐knot nematodes (RKNs, Meloidogyne incognita ) are economically important endoparasites with a wide host range. We used a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomat…
View article: Utilization of Molecular, Phenotypic, and Geographical Diversity to Develop Compact Composite Core Collection in the Oilseed Crop, Safflower (Carthamus tinctorius L.) through Maximization Strategy
Utilization of Molecular, Phenotypic, and Geographical Diversity to Develop Compact Composite Core Collection in the Oilseed Crop, Safflower (Carthamus tinctorius L.) through Maximization Strategy Open
Safflower (Carthamus tinctorius L.) is a dryland oilseed crop yielding high quality edible oil. Previous studies have described significant phenotypic variability in the crop and used geographical distribution and phenotypic trait v…
View article: Comprehensive Expression Profiling of Rice Tetraspanin Genes Reveals Diverse Roles During Development and Abiotic Stress
Comprehensive Expression Profiling of Rice Tetraspanin Genes Reveals Diverse Roles During Development and Abiotic Stress Open
Tetraspanin family is comprised of evolutionarily conserved integral membrane proteins. The incredible ability of tetraspanins to form 'micro domain complexes' and their preferential targeting to membranes emphasizes their active associati…
View article: De novo transcriptome profiling of cold-stressed siliques during pod filling stages in Indian mustard (Brassica juncea L.)
De novo transcriptome profiling of cold-stressed siliques during pod filling stages in Indian mustard (Brassica juncea L.) Open
Low temperature is a major abiotic stress that impedes plant growth and development. Brassica juncea is an economically important oil seed crop and is sensitive to freezing stress during pod filling subsequently leading to abortion of seed…
View article: Development of Genomic Microsatellite Markers in Carthamus tinctorius L. (Safflower) Using Next Generation Sequencing and Assessment of Their Cross-Species Transferability and Utility for Diversity Analysis
Development of Genomic Microsatellite Markers in Carthamus tinctorius L. (Safflower) Using Next Generation Sequencing and Assessment of Their Cross-Species Transferability and Utility for Diversity Analysis Open
Next generation sequencing of safflower genome generated a large set of microsatellite markers. The novel markers developed in this study will add to the existing repertoire of markers and can be used for diversity analysis, synteny studie…
View article: Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea
Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea Open
Our study provides first comprehensive discovery of B. juncea transcriptome under high temperature and drought stress conditions. Transcriptome resource generated in this study will enhance our understanding on the molecular mechanisms inv…