Marc-Étienne Rousseau
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View article: Open Data Governance at the Canadian Open Neuroscience Platform (CONP): From the Walled Garden to the Arboretum
Open Data Governance at the Canadian Open Neuroscience Platform (CONP): From the Walled Garden to the Arboretum Open
Scientific research communities pursue dual imperatives in implementing strategies to share their data. These communities attempt to maximize the accessibility of biomedical data for downstream research use, in furtherance of open science …
View article: Research Software Current State Assessment
Research Software Current State Assessment Open
<p>As the first position paper on research software (RS) in Canada, this report surveys and summarizes RS generally as an emerging field and as an area of professionalization, nationally and internationally, and documents strengths, …
View article: Research Software Current State Assessment
Research Software Current State Assessment Open
<p>As the first position paper on research software (RS) in Canada, this report surveys and summarizes RS generally as an emerging field and as an area of professionalization, nationally and internationally, and documents strengths, …
View article: There's no "I" in Research Data Management: Reshaping RDM Services Toward a Collaborative Multi-Stakeholder Model
There's no "I" in Research Data Management: Reshaping RDM Services Toward a Collaborative Multi-Stakeholder Model Open
Objective: This article examines a reshaped service model for research data management (RDM) founded on centralized and cohesive collaboration between multiple stakeholders at a large research university in Canada. This initiative, along w…
View article: Research Software Current State Assessment
Research Software Current State Assessment Open
<p>As the first position paper on research software (RS) in Canada, this report surveys and summarizes RS generally as an emerging field and as an area of professionalization, nationally and internationally, and documents strengths, …
View article: Évaluation de l'état actuel des logiciels de recherche
Évaluation de l'état actuel des logiciels de recherche Open
<p>En tant que premier exposé de position sur les logiciels de recherche (LR) au Canada, ce rapport analyse les LR et les présente de façon générale comme une nouvelle spécialité et un…
View article: Mega-Analysis of Gray Matter Volume in Substance Dependence: General and Substance-Specific Regional Effects
Mega-Analysis of Gray Matter Volume in Substance Dependence: General and Substance-Specific Regional Effects Open
The results indicate that dependence on a range of different substances shares a common neural substrate and that differential patterns of regional volume could serve as useful biomarkers of dependence on alcohol and nicotine.
View article: Boutiques: a flexible framework to integrate command-line applications in computing platforms
Boutiques: a flexible framework to integrate command-line applications in computing platforms Open
We present Boutiques, a system to automatically publish, integrate, and execute command-line applications across computational platforms. Boutiques applications are installed through software containers described in a rich and flexible JSO…
View article: Software architectures to integrate workflow engines in science gateways
Software architectures to integrate workflow engines in science gateways Open
Science gateways often rely on workflow engines to execute applications on distributed infrastructures. We investigate six software architectures commonly used to integrate workflow engines into science gateways. In tight integration, the …
View article: Cyberinfrastructure for Open Science at the Montreal Neurological Institute
Cyberinfrastructure for Open Science at the Montreal Neurological Institute Open
Data sharing is becoming more of a requirement as technologies mature and as global research and communications diversify. As a result, researchers are looking for practical solutions, not only to enhance scientific collaborations, but als…
View article: Nipype interfaces in CBRAIN
Nipype interfaces in CBRAIN Open
View article: The MNI data-sharing and processing ecosystem
The MNI data-sharing and processing ecosystem Open
Neuroimaging has been facing a data deluge characterized by the exponential growth of both raw and processed data. As a result, mining the massive quantities of digital data collected in these studies offers unprecedented opportunities and…
View article: Reproducibility of neuroimaging analyses across operating systems
Reproducibility of neuroimaging analyses across operating systems Open
Neuroimaging pipelines are known to generate different results depending on the computing platform where they are compiled and executed. We quantify these differences for brain tissue classification, fMRI analysis, and cortical thickness (…
View article: BrainBrowser: distributed, web-based neurological data visualization
BrainBrowser: distributed, web-based neurological data visualization Open
Recent years have seen massive, distributed datasets become the norm in neuroimaging research, and the methodologies used to analyze them have, in response, become more collaborative and exploratory. Tools and infrastructure are continuous…