Marcel Bouffaud
YOU?
Author Swipe
View article: Additional file 2: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds
Additional file 2: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds Open
Annotation of the regulated genes. This list of probes corresponds to the differential probes from the linear mixed model, the pairwise analysis and the discriminating analysis. From this list, 1,394 probes were localized on porcine chromo…
View article: Additional file 1: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds
Additional file 1: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds Open
1,859 genes were identified to be differentially expressed between five breeds according to statistical analysis. 1,703 were differentially expressed with a linear mixed model (FDR
View article: Additional file 4: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds
Additional file 4: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds Open
70 pathways enriched to explain the biologically diversity of five pig breeds. These pathways have been identified with the free software GeneCodis. These pathways concerned the KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways which…
View article: Additional file 3: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds
Additional file 3: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds Open
Differentially expressed genes on autosomes. Only probes with an alignment on the porcine genome Sscrofa10.2 are reported with the corresponding annotation from Ensembl. The global and pairwise statistics are given for all the comparisons.…
View article: Additional file 6: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds
Additional file 6: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds Open
EASE systematic functional annotation for the 683 unique differentially expressed genes. Detailed functional information were obtained from EASE (Expression Analysis Systematic Explorer) from DAVID (Database for Annotation, Visualization a…
View article: Additional file 5: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds
Additional file 5: of Exploring transcriptomic diversity in muscle revealed that cellular signaling pathways mainly differentiate five Western porcine breeds Open
228 spots (171 unique genes) allow the discrimination between the five lines. These genes were identified as differentially expressed from one line against the others or were identified in the sPLS-DA or Random Forest analysis. The 15 disc…