Marta Eide
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View article: Integrative omics-analysis of lipid metabolism regulation by peroxisome proliferator-activated receptor a and b agonists in male Atlantic cod
Integrative omics-analysis of lipid metabolism regulation by peroxisome proliferator-activated receptor a and b agonists in male Atlantic cod Open
Lipid metabolism is essential in maintaining energy homeostasis in multicellular organisms. In vertebrates, the peroxisome proliferator-activated receptors (PPARs, NR1C) regulate the expression of many genes involved in these processes. At…
View article: The Chemical Defensome of Fish: Conservation and Divergence of Genes Involved in Sensing and Responding to Pollutants Among Five Model Teleosts
The Chemical Defensome of Fish: Conservation and Divergence of Genes Involved in Sensing and Responding to Pollutants Among Five Model Teleosts Open
How an organism copes with chemicals is largely determined by the genes and proteins that collectively function to defend against, detoxify and eliminate chemical stressors. This integrative network includes receptors and transcription fac…
View article: ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species
ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species Open
The availability of genome sequences, annotations, and knowledge of the biochemistry underlying metabolic transformations has led to the generation of metabolic network reconstructions for a wide range of organisms in bacteria, archaea, an…
View article: ReCodLiver0.9: Overcoming challenges in genome-scale metabolic reconstruction of a non-model species
ReCodLiver0.9: Overcoming challenges in genome-scale metabolic reconstruction of a non-model species Open
The availability of genome sequences, annotations and knowledge of the biochemistry underlying metabolic transformations has led to the generation of metabolic network reconstructions for a wide range of organisms in bacteria, archaea, and…
View article: Independent losses of a xenobiotic receptor across teleost evolution
Independent losses of a xenobiotic receptor across teleost evolution Open
Sensitivity to environmental stressors largely depend on the genetic complement of the organism. Recent sequencing and assembly of teleost fish genomes enable us to trace the evolution of defense genes in the largest and most diverse group…
View article: MSA teleost PXR sequences, based on LBD
MSA teleost PXR sequences, based on LBD Open
Based on their ligand binding domains, sequences identified in the bioinformatic searches of 76 teleost genome assemblies, using zebrafish, medaka, and tetraodon Pxr as query, were aligned with annotated or cloned teleost Pxr (Nr1i1), Vdr …
View article: MSA teleost PXR sequences, based on LBD
MSA teleost PXR sequences, based on LBD Open
Searching 76 teleost genomes using zebrafish Pxr as query, the following sequences were extracted and translated to amino acids sequences, and aligned to published or cloned teleost Nr1i and Nr1d sequences.MSA performed in ClustalX 2.1, us…