Marta Ribes
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View article: Continuous determination of dissolved inorganic carbon fluxes from pumping suspension feeders
Continuous determination of dissolved inorganic carbon fluxes from pumping suspension feeders Open
Suspension‐feeding organisms play a pivotal role in the cycling of carbon in the oceans. They filter large amounts of water, filter out organic matter, remineralize it, and release respiratory CO 2 back into the water column. Measuring emi…
View article: Robust Consensus Nuclear and Cell Segmentation
Robust Consensus Nuclear and Cell Segmentation Open
Cell segmentation is a crucial step in numerous biomedical imaging endeavors; so much so that the community is flooded with publicly available, state-of-the-art segmentation techniques ready for out of the box use. Assessing the virtues an…
View article: Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT Open
IMAXT Consortium Author List
View article: Data from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
Data from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT Open
Summary:The Imaging and Molecular Annotation of Xenografts and Tumors Cancer Grand Challenges team was set up with the objective of developing the “next generation” of pathology and cancer research by using a combination of single-cell and…
View article: Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT
Consortium Author List from Cancer Research in the Age of Spatial Omics: Lessons from IMAXT Open
IMAXT Consortium Author List
View article: Transcriptomic responses of Mediterranean sponges upon encounter with seawater or symbiont microbial consortia
Transcriptomic responses of Mediterranean sponges upon encounter with seawater or symbiont microbial consortia Open
Sponges (phylum Porifera) constantly interact with microbes from the water column while filter-feeding and with the symbiotic partners they harbor within their mesohyl. Despite early observations on differential uptake between symbiont and…
View article: Fouling of a boat hull by the invasive zooxanthellate coral Oculina patagonica - could shipping be enhancing its unique large-scale spread?
Fouling of a boat hull by the invasive zooxanthellate coral Oculina patagonica - could shipping be enhancing its unique large-scale spread? Open
The zooxanthellate coral Oculina patagonica (Scleractinia, Oculinidae) is an invasive species that was first recorded in the Mediterranean Sea in 1966 and currently has expanded its distribution across both the western and eastern Atlantic…
View article: Single-cell genomic variation induced by mutational processes in cancer
Single-cell genomic variation induced by mutational processes in cancer Open
How cell-to-cell copy number alterations that underpin genomic instability 1 in human cancers drive genomic and phenotypic variation, and consequently the evolution of cancer 2 , remains understudied. Here, by applying scaled single-cell w…
View article: Corrigendum: In situ Pumping Rate of 20 Marine Demosponges Is a Function of Osculum Area
Corrigendum: In situ Pumping Rate of 20 Marine Demosponges Is a Function of Osculum Area Open
A Corrigendum on In situ Pumping Rate of 20 Marine Demosponges Is a Function of Osculum Area by Morganti, T. M., Ribes, M., Moskovich, R., Weisz, J. B., Yahel, G., and Coma, R. (2021). Frontiers in Marine Science 8: 583188. doi: 10.3389/fm…
View article: In situ Pumping Rate of 20 Marine Demosponges Is a Function of Osculum Area
In situ Pumping Rate of 20 Marine Demosponges Is a Function of Osculum Area Open
Sponges play a key role in the transfer of energy and nutrients into many benthic ecosystems, and the volume of water they process is an important regulator of these fluxes. Theoretical scaling relationships between sponge volume, osculum …
View article: Lifestyle of sponge symbiont phages by host prediction and correlative microscopy
Lifestyle of sponge symbiont phages by host prediction and correlative microscopy Open
Bacteriophages (phages) are ubiquitous elements in nature, but their ecology and role in animals remains little understood. Sponges represent the oldest known extant animal-microbe symbiosis and are associated with dense and diverse microb…
View article: Grazing results in mobilization of spherulous cells and re-allocation of secondary metabolites to the surface in the sponge<i>Aplysina aerophoba</i>
Grazing results in mobilization of spherulous cells and re-allocation of secondary metabolites to the surface in the sponge<i>Aplysina aerophoba</i> Open
On the sea floor, prey and predator commonly engage in a chemical warfare. Here, sponges thrive due to their specific and diverse chemical arsenal. Yet, some animals use these chemically-defended organisms as food and home. Most research o…
View article: Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses
Heterotrophy in the earliest gut: a single-cell view of heterotrophic carbon and nitrogen assimilation in sponge-microbe symbioses Open
Sponges are the oldest known extant animal-microbe symbiosis. These ubiquitous benthic animals play an important role in marine ecosystems in the cycling of dissolved organic matter (DOM), the largest source of organic matter on Earth. The…
View article: Size Is the Major Determinant of Pumping Rates in Marine Sponges
Size Is the Major Determinant of Pumping Rates in Marine Sponges Open
Sponges play an important ecological function in many benthic habitats. They filter large volumes of water, retain suspended particles with high efficiency, and process dissolved compounds. Nevertheless, the factors that regulate sponge pu…
View article: A symbiont phage protein aids in eukaryote immune evasion
A symbiont phage protein aids in eukaryote immune evasion Open
Phages are increasingly recognized as important members of host associated microbial communities. While recent studies have revealed vast genomic diversity in the virosphere, the new frontier is to understand how newly discovered phages ma…
View article: Microscopic images and 2D-MALDI-images of the sponge Aplysina aerophoba in response to grazing and video recording of grazing behavior
Microscopic images and 2D-MALDI-images of the sponge Aplysina aerophoba in response to grazing and video recording of grazing behavior Open
We aimed to investigate the cellular and chemical response of the chemically defended sponge Aplysina aerophoba (Phylum Porifera: Class Demospongiae) to grazing by its specialist Tylodina perversa (Phylum Mollusca: Class Opistobranchia). T…
View article: Differential expression of immune receptors in two marine sponges upon exposure to microbial-associated molecular patterns
Differential expression of immune receptors in two marine sponges upon exposure to microbial-associated molecular patterns Open
The innate immune system helps animals to navigate the microbial world. The response to microbes relies on the specific recognition of microbial-associated molecular patterns (MAMPs) by immune receptors. Sponges (phylum Porifera), as early…
View article: The dynamic core microbiome: Structure, dynamics and stability
The dynamic core microbiome: Structure, dynamics and stability Open
The long-term stability of microbiomes is crucial as the persistent occurrence of beneficial microbes and their associated functions ensure host health and well-being. Microbiomes are highly diverse and dynamic, making them challenging to …
View article: A comparison of remote-sensing SST and in situ seawater temperature in near-shore habitats in the western Mediterranean Sea
A comparison of remote-sensing SST and in situ seawater temperature in near-shore habitats in the western Mediterranean Sea Open
Remote sensing of sea surface temperature (SST) is widely used in climate science because it provides a quasi-synoptic coverage of the ocean. However, the use of these data for near-shore habitats is hindered by the proximity of the coast,…