Martin Tříska
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View article: Extracellular vesicle-associated repetitive element DNAs as candidate osteosarcoma biomarkers
Extracellular vesicle-associated repetitive element DNAs as candidate osteosarcoma biomarkers Open
Osteosarcoma (OS) is the most common malignant bone tumor in children and young adults. Despite that high-risk factors have been identified, no test for early detection is available. This study aimed to identify circulating nucleic acid se…
View article: Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe
Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe Open
Our project has patched the hole in the genetic map of Eurasia: we demonstrated complexity of genetic structure of Northern Eurasians, existence of East-West and North-South genetic gradients, and assessed different inputs of ancient popul…
View article: Nucleotide patterns aiding in prediction of eukaryotic promoters
Nucleotide patterns aiding in prediction of eukaryotic promoters Open
Computational analysis of promoters is hindered by the complexity of their architecture. In less studied genomes with complex organization, false positive promoter predictions are common. Accurate identification of transcription start site…
View article: Evidence-based gene models for structural and functional annotations of the oil palm genome
Evidence-based gene models for structural and functional annotations of the oil palm genome Open
This article was reviewed by Alexander Kel, Igor Rogozin, and Vladimir A. Kuznetsov.
View article: Evidence-based gene models for structural and functional annotations of the oil palm genome
Evidence-based gene models for structural and functional annotations of the oil palm genome Open
The advent of rapid and inexpensive DNA sequencing has led to an explosion of data that must be transformed into knowledge about genome organization and function. Gene prediction is customarily the starting point for genome analysis. This …
View article: Additional file 1: of Evidence-based gene models for structural and functional annotations of the oil palm genome
Additional file 1: of Evidence-based gene models for structural and functional annotations of the oil palm genome Open
Includes information of oil palm RNA-seq data, annotation of IG, R genes and FAB genes, GO and GC3. (XLSX 8028Â kb)
View article: Additional file 3: Table S1a. of Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe
Additional file 3: Table S1a. of Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe Open
List of samples included in “Extended” dataset. Table S1b List of samples included in “Core” dataset. Table S1c List of samples included in “Ancient” dataset. Table S2 Results of ADMIXTURE for K = 9. Table S3 Results of ADMIXTURE for K = 6…
View article: Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry
Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry Open
View article: Whole-genome modeling accurately predicts quantitative traits in plants
Whole-genome modeling accurately predicts quantitative traits in plants Open
Understanding the relationship between genomic variation and variation in phenotypes for quantitative traits such as physiology, yield, fitness or behavior, will provide important insights for both predicting adaptive evolution and for bre…
View article: Whole-genome modeling accurately predicts quantitative traits, as revealed in plants
Whole-genome modeling accurately predicts quantitative traits, as revealed in plants Open
Many adaptive events in natural populations, as well as response to artificial selection, are caused by polygenic action. Under selective pressure, the adaptive traits can quickly respond via small allele frequency shifts spread across num…
View article: Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry
Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry Open
The Kets, an ethnic group in the Yenisei River basin, Russia, are considered the last nomadic hunter-gatherers of Siberia, and Ket language has no transparent affiliation with any language family. We investigated connections between the Ke…
View article: Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry
Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry Open
The Kets, an ethnic group in the Yenisei River basin, Russia, are considered the last nomadic hunter-gatherers of Siberia, and Ket language has no transparent affiliation with any language family. We investigated connections between the Ke…
View article: Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with\n significant ancient North Eurasian ancestry
Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with\n significant ancient North Eurasian ancestry Open
The Kets, an ethnic group in the Yenisei River basin, Russia, are considered\nthe last nomadic hunter-gatherers of Siberia, and Ket language has no\ntransparent affiliation with any language family. We investigated connections\nbetween the…
View article: Differential Evolution approach to detect recent admixture
Differential Evolution approach to detect recent admixture Open