Mathieu Pernice
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View article: Explainable artificial intelligence for predicting rare earth elements leaching from secondary resources
Explainable artificial intelligence for predicting rare earth elements leaching from secondary resources Open
The increasing global demand for rare earth elements (REEs) presents significant mining and extraction challenges. Extraction of REEs from secondary resources such as mine tailings, electronic waste, and industrial by-products becomes an a…
View article: Harnessing microalgae for finfish nutrition: advances in biotechnology and aquafeed development
Harnessing microalgae for finfish nutrition: advances in biotechnology and aquafeed development Open
Finfish aquaculture is a key contributor to global seafood production, providing quality protein to consumers across the world, however, the search for regenerative, cost-effective and scalable raw materials continues. Alternatives to wild…
View article: Explainable artificial intelligence for predicting rare earth elements leaching from secondary resources
Explainable artificial intelligence for predicting rare earth elements leaching from secondary resources Open
The increasing global demand for rare earth elements (REEs) presents significant mining and extraction challenges. Extraction of REEs from secondary resources such as mine tailings, electronic waste, and industrial by-products becomes an a…
View article: Algae
Algae Open
Algae are versatile photosynthetic organisms, with remarkable adaptability and metabolic properties that allow them to live in diverse and extreme habitats, as well as holding great potential for biotechnology. They play fundamental roles …
View article: Multi-omic profiles of <i>Sorghum</i> genotypes with contrasting heat tolerance connect pathways related to thermotolerance
Multi-omic profiles of <i>Sorghum</i> genotypes with contrasting heat tolerance connect pathways related to thermotolerance Open
Understanding how crop varieties acclimate to elevated temperatures is key to priming them for future climates. Here, we imposed a 6 d heat shock treatment (reaching 45 °C) on two genotypes of Sorghum bicolor [one sensitive to heat shock (…
View article: Proteomic analysis reveals molecular changes following genetic engineering in Chlamydomonas reinhardtii
Proteomic analysis reveals molecular changes following genetic engineering in Chlamydomonas reinhardtii Open
These results provide new insights into the modifications of C. reinhardtii proteome after transformation, highlighting possible pathways involved in gene silencing. Moreover, this study identifies multiple protein targets for future genet…
View article: Biomining using microalgae to recover rare earth elements (REEs) from bauxite
Biomining using microalgae to recover rare earth elements (REEs) from bauxite Open
Biomining using microalgae has emerged as a sustainable option to extract rare earth elements (REEs). This study aims to (i) explore the capability of REEs recovery from bauxite by microalgae, (ii) assess the change of biochemical function…
View article: Differential gene expression in a subpopulation of Phaeodactylum tricornutum with enhanced growth and carotenoid production after FACS-mediated selection
Differential gene expression in a subpopulation of Phaeodactylum tricornutum with enhanced growth and carotenoid production after FACS-mediated selection Open
Fluorescence-Activated Cell Sorting (FACS) is a powerful method with many applications in microalgal research, especially for screening and selection of cells with improved phenotypes. However, the technology requires review of gene expres…
View article: Heat-evolved microalgal symbionts increase thermal bleaching tolerance of coral juveniles without a trade-off against growth
Heat-evolved microalgal symbionts increase thermal bleaching tolerance of coral juveniles without a trade-off against growth Open
Global climate change is threatening the persistence of coral reefs as associated summer heatwaves trigger the loss of microalgal endosymbionts (Symbiodiniaceae) from the coral tissues, or coral bleaching. We infected aposymbiotic juvenile…
View article: Exploring the potential of algae-bacteria interactions in the biocontrol of the marine pathogen Vibrio parahaemolyticus
Exploring the potential of algae-bacteria interactions in the biocontrol of the marine pathogen Vibrio parahaemolyticus Open
The marine bacterium Vibrio parahaemolyticus is the leading cause of seafood-related food poisoning worldwide and a pathogen of marine species harvested in aquaculture. An outbreak of pathogenic V. parahaemolyticus within crustacean and bi…
View article: FACS-mediated selection enhances growth and carotenoid production in subpopulations of Phaeodactylum tricornutum
FACS-mediated selection enhances growth and carotenoid production in subpopulations of Phaeodactylum tricornutum Open
Fluorescence-Activated Cell Sorting (FACS) is a powerful method with many applications in microalgal research, especially for screening and selection of cells with improved phenotypes. However, the technology requires further investigation…
View article: Signs of local adaptation by genetic selection and isolation promoted by extreme temperature and salinity in the Mediterranean seagrass <i>Posidonia oceanica</i>
Signs of local adaptation by genetic selection and isolation promoted by extreme temperature and salinity in the Mediterranean seagrass <i>Posidonia oceanica</i> Open
Adaptation to local conditions is known to occur in seagrasses; however, knowledge of the genetic basis underlying this phenomenon remains scarce. Here, we analysed Posidonia oceanica from six sites within and around the Stagnone di Marsal…
View article: Save the planet with green industries using algae
Save the planet with green industries using algae Open
We can use photosynthesis to capture carbon and make industries greener. Algae-driven carbon capture and manufacturing offer the potential for reducing CO2 emissions while also producing commodities such as bioplastics.
View article: Molecular insights into the Darwin paradox of coral reefs from the sea anemone Aiptasia
Molecular insights into the Darwin paradox of coral reefs from the sea anemone Aiptasia Open
Symbiotic cnidarians such as corals and anemones form highly productive and biodiverse coral reef ecosystems in nutrient-poor ocean environments, a phenomenon known as Darwin’s paradox. Resolving this paradox requires elucidating the molec…
View article: Chemotaxis increases metabolic exchanges between marine picophytoplankton and heterotrophic bacteria
Chemotaxis increases metabolic exchanges between marine picophytoplankton and heterotrophic bacteria Open
Growth data (sheets 1-2), metabolomics data (sheets 3-4), chemotaxis data (sheet 5) and NanoSIMS data (sheet 6-10) associated with the publication 'Chemotaxis increases metabolic exchanges between marine picophytoplankton and heterotrophic…
View article: Molecular insights into the Darwin paradox of coral reefs from the sea anemone Aiptasia
Molecular insights into the Darwin paradox of coral reefs from the sea anemone Aiptasia Open
Symbiotic cnidarians such as corals and anemones form highly productive and biodiverse coral-reef ecosystems in nutrient-poor ocean environments, a phenomenon known as Darwin’s Paradox. Resolving this paradox requires elucidating the molec…
View article: Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility
Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility Open
The skeleton of reef-building coral harbors diverse microbial communities that could compensate for metabolic deficiencies caused by the loss of algal endosymbionts, i.e., coral bleaching. However, it is unknown to what extent endolith tax…
View article: Data from 'Deoxygenation lowers thermal threshold of coral bleaching.'
Data from 'Deoxygenation lowers thermal threshold of coral bleaching.' Open
Increasing exposure to deoxygenation as a result of climate warming and localised pollution is emerging as an important contributing factor for widespread coral bleaching and mortality. Some corals have been observed to thrive under multip…
View article: Data from 'Deoxygenation lowers thermal threshold of coral bleaching.'
Data from 'Deoxygenation lowers thermal threshold of coral bleaching.' Open
Increasing exposure to deoxygenation as a result of climate warming and localised pollution is emerging as an important contributing factor for widespread coral bleaching and mortality. Some corals have been observed to thrive under multip…
View article: Disparate Inventories of Hypoxia Gene Sets Across Corals Align With Inferred Environmental Resilience
Disparate Inventories of Hypoxia Gene Sets Across Corals Align With Inferred Environmental Resilience Open
Aquatic deoxygenation has been flagged as an overlooked but key factor contributing to mass bleaching-induced coral mortality. During deoxygenation events triggered by coastal nutrient pollution and ocean warming, oxygen supplies lower to …
View article: Data from 'Disparate inventories of hypoxia gene sets across corals align with inferred environmental resilience'
Data from 'Disparate inventories of hypoxia gene sets across corals align with inferred environmental resilience' Open
Aquatic deoxygenation has been flagged as an overlooked but key factor driving mass bleaching-induced coral mortality as oxygen supplies lower to concentrations that can elicit an aerobic metabolic crisis i.e., hypoxia. Surprisingly little…
View article: Data from 'Disparate inventories of hypoxia gene sets across corals align with inferred environmental resilience'
Data from 'Disparate inventories of hypoxia gene sets across corals align with inferred environmental resilience' Open
Aquatic deoxygenation has been flagged as an overlooked but key factor driving mass bleaching-induced coral mortality as oxygen supplies lower to concentrations that can elicit an aerobic metabolic crisis i.e., hypoxia. Surprisingly little…