Matthew P. Hardy
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View article: Turning Waste Into Insight: A Novel Proteomic Approach to Non-Invasive Wound Biomarker Discovery
Turning Waste Into Insight: A Novel Proteomic Approach to Non-Invasive Wound Biomarker Discovery Open
Chronic wounds such as diabetic foot ulcers (DFUs) and venous leg ulcers (VLUs) are a growing public health burden, contributing to significant morbidity, healthcare costs, and mortality. Current management strategies are hampered by the i…
View article: Pre-clinical characterization of CSL040, a soluble complement receptor 1 (CR1) fragment
Pre-clinical characterization of CSL040, a soluble complement receptor 1 (CR1) fragment Open
View article: P724: Expanding the matched annotation from NCBI and EMBL-EBI (MANE) dataset to include MANE Select for non-coding genes
P724: Expanding the matched annotation from NCBI and EMBL-EBI (MANE) dataset to include MANE Select for non-coding genes Open
View article: Ensembl 2025
Ensembl 2025 Open
Ensembl (www.ensembl.org) is an open platform integrating publicly available genomics data across the tree of life with a focus on eukaryotic species related to human health, agriculture and biodiversity. This year has seen a continued exp…
View article: GENCODE 2025: reference gene annotation for human and mouse
GENCODE 2025: reference gene annotation for human and mouse Open
GENCODE produces comprehensive reference gene annotation for human and mouse. Entering its twentieth year, the project remains highly active as new technologies and methodologies allow us to catalog the genome at ever-increasing granularit…
View article: GENCODE: massively expanding the lncRNA catalog through capture long-read RNA sequencing
GENCODE: massively expanding the lncRNA catalog through capture long-read RNA sequencing Open
Accurate and complete gene annotations are indispensable for understanding how genome sequences encode biological functions. For twenty years, the GENCODE consortium has developed reference annotations for the human and mouse genomes, beco…
View article: Ensembl 2024
Ensembl 2024 Open
Ensembl (https://www.ensembl.org) is a freely available genomic resource that has produced high-quality annotations, tools, and services for vertebrates and model organisms for more than two decades. In recent years, there has been a drama…
View article: Assessing student perception of the integration of portable wireless ultrasound imaging in undergraduate anatomy education
Assessing student perception of the integration of portable wireless ultrasound imaging in undergraduate anatomy education Open
Anatomy is the foundation of many physiology and healthcare‐related degrees. With limited access to cadavers in many universities, it is essential to investigate techniques that could be utilized to support and enhance the teaching of anat…
View article: P539: Fostering a common language in clinical genomics: MANE Select as a universal standard to report clinical variants
P539: Fostering a common language in clinical genomics: MANE Select as a universal standard to report clinical variants Open
View article: GENCODE: reference annotation for the human and mouse genomes in 2023
GENCODE: reference annotation for the human and mouse genomes in 2023 Open
GENCODE produces high quality gene and transcript annotation for the human and mouse genomes. All GENCODE annotation is supported by experimental data and serves as a reference for genome biology and clinical genomics. The GENCODE consorti…
View article: Ensembl 2023
Ensembl 2023 Open
Ensembl (https://www.ensembl.org) has produced high-quality genomic resources for vertebrates and model organisms for more than twenty years. During that time, our resources, services and tools have continually evolved in line with both th…
View article: Soluble Complement Receptor 1 Therapeutics
Soluble Complement Receptor 1 Therapeutics Open
Human Complement Receptor 1 (CR1/CD35) is a potent negative regulator of the complement system. Its mechanism of action is through interaction with the complement activation fragments, C3b and C4b to mediate decay acceleration of the C3 an…
View article: A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
A joint NCBI and EMBL-EBI transcript set for clinical genomics and research Open
Comprehensive genome annotation is essential to understand the impact of clinically relevant variants. However, the absence of a standard for clinical reporting and browser display complicates the process of consistent interpretation and r…
View article: A potent truncated form of human soluble CR1 is protective in a mouse model of renal ischemia–reperfusion injury
A potent truncated form of human soluble CR1 is protective in a mouse model of renal ischemia–reperfusion injury Open
View article: Ensembl 2022
Ensembl 2022 Open
Ensembl (https://www.ensembl.org) is unique in its flexible infrastructure for access to genomic data and annotation. It has been designed to efficiently deliver annotation at scale for all eukaryotic life, and it also provides deep compre…
View article: Modular Platform for the Development of Recombinant Hemoglobin Scavenger Biotherapeutics
Modular Platform for the Development of Recombinant Hemoglobin Scavenger Biotherapeutics Open
Cell-free hemoglobin (Hb) is a driver of disease progression in conditions with intravascular or localized hemolysis. Genetic and acquired anemias or emergency medical conditions such as aneurysmal subarachnoid hemorrhage involve tissue Hb…
View article: Responding to Sexual Boundary Notifications: The Evolving Regulatory Approach in Australia
Responding to Sexual Boundary Notifications: The Evolving Regulatory Approach in Australia Open
A sexual boundary violation by a health practitioner has an immense impact on a patient, and the trust and confidence in the health care system and the health care regulator are negatively affected. The Australian Health Practitioner Regul…
View article: A novel soluble complement receptor 1 fragment with enhanced therapeutic potential
A novel soluble complement receptor 1 fragment with enhanced therapeutic potential Open
Human complement receptor 1 (HuCR1) is a pivotal regulator of complement activity, acting on all three complement pathways as a membrane-bound receptor of C3b/C4b, C3/C5 convertase decay accelerator, and cofactor for factor I-mediated clea…
View article: GENCODE 2021
GENCODE 2021 Open
The GENCODE project annotates human and mouse genes and transcripts supported by experimental data with high accuracy, providing a foundational resource that supports genome biology and clinical genomics. GENCODE annotation processes make …
View article: Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons
Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons Open
View article: Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons.
Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons. Open
BACKGROUND:Olfactory receptor (OR) genes are the largest multi-gene family in the mammalian genome, with 874 in human and 1483 loci in mouse (including pseudogenes). The expansion of the OR gene repertoire has occurred through numerous dup…
View article: Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons.
Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons. Open
Background Olfactory receptor (OR) genes are the largest multi-gene family in the mammalian genome, with 874 in human and 1483 loci in mouse (including pseudogenes). The expansion of the OR gene repertoire has occurred through numerous dup…
View article: Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons
Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons Open
Background: Olfactory receptor (OR) genes are the largest multi-gene family in the mammalian genome, with 874 in human and 1483 loci in mouse (including pseudogenes). The expansion of the OR gene repertoire has occurred through numerous du…
View article: Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons
Expert Curation of the Human and Mouse Olfactory Receptor Gene Repertoires Identifies Conserved Coding Regions Split Across Two Exons Open
Background: Olfactory receptor (OR) genes are the largest multi-gene family in the mammalian genome, with 874 in human and 1483 loci in mouse (including pseudogenes). The expansion of the OR gene repertoire has occurred through numerous du…
View article: Additional file 3 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons
Additional file 3 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons Open
Additional file 3 Supplementary File 2 | List of mouse OR genes present in MGI that cannot be placed in the mouse reference genome.
View article: Additional file 7 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons
Additional file 7 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons Open
Additional file 7 Supplementary File 6 | Metadata for the human samples analysed, and normalised counts for human OR genes.
View article: Additional file 5 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons
Additional file 5 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons Open
Additional file 5 Supplementary File 4 | GTF annotation file with all curated human OR transcript models from the Ensembl-HAVANA annotation.
View article: Additional file 4 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons
Additional file 4 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons Open
Additional file 4 Supplementary File 3 | List of curated human and mouse split OR genes.
View article: Additional file 6 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons
Additional file 6 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons Open
Additional file 6 Supplementary File 5 | GTF annotation file with all curated mouse OR transcript models from the Ensembl-HAVANA annotation.
View article: Additional file 2 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons
Additional file 2 of Expert curation of the human and mouse olfactory receptor gene repertoires identifies conserved coding regions split across two exons Open
Additional file 2 Supplementary File 1 | Table with all the human and mouse OR genes in the Ensembl-HAVANA annotation. For each gene we provide their official gene symbol, chromosomal location, description, biotype and associated Ensembl i…