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View article: BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA Open
Gene prediction has remained an active area of bioinformatics research for a long time. Still, gene prediction in large eukaryotic genomes presents a challenge that must be addressed by new algorithms. The amount and significance of the ev…
View article: BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA Open
Gene prediction has remained an active area of bioinformatics research for a long time. Still, gene prediction in large eukaryotic genomes presents a challenge that must be addressed by new algorithms. The amount and significance of the ev…
View article: GALBA: Genome Annotation with Miniprot and AUGUSTUS
GALBA: Genome Annotation with Miniprot and AUGUSTUS Open
The Earth Biogenome Project has rapidly increased the number of available eukaryotic genomes, but most released genomes continue to lack annotation of protein-coding genes. In addition, no transcriptome data is available for some genomes. …
Classifying sex with MRI Open
Sex differences in the size of specific brain structures have been extensively studied but careful and reproducible statistical hypothesis testing to identify them produced overall small effect sizes and differences brains of males and fem…
Global, Highly Specific and Fast Filtering of Alignment Seeds Open
An important initial phase of arguably most homology search and alignment methods such as required for genome alignments is seed finding . The seed finding step is crucial to curb the runtime as potential alignments are restricted to and a…