Maximilian Collenberg
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View article: iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis
iNOME-seq: in vivo simultaneous genome-wide mapping of chromatin accessibility, nucleosome positioning, DNA-binding protein sites, and DNA methylation in Arabidopsis Open
We present iNOMe-seq, a novel method for in vivo simultaneous profiling of chromatin accessibility, nucleosome occupancy, DNA-binding protein sites, and DNA methylation in living tissues. iNOMe-seq utilizes an m5C methyltransferase to mark…
View article: Deleterious phenotypes in wild <i>Arabidopsis arenosa</i> populations are common and linked to runs of homozygosity
Deleterious phenotypes in wild <i>Arabidopsis arenosa</i> populations are common and linked to runs of homozygosity Open
In this study, we aimed to systematically assess the frequency at which potentially deleterious phenotypes appear in natural populations of the outcrossing model plant Arabidopsis arenosa, and to establish their underlying genetics. For th…
View article: Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor
Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor Open
Clonal propagation is frequently used in commercial plant breeding and biotechnology programs because it minimizes genetic variation, yet it is not uncommon to observe clonal plants with stable phenotypic changes, a phenomenon known as som…
View article: The improved genome of the nematode <i>Parapristionchus giblindavisi</i> provides insights into lineage-specific gene family evolution
The improved genome of the nematode <i>Parapristionchus giblindavisi</i> provides insights into lineage-specific gene family evolution Open
Nematodes such as Caenorhabditis elegans and Pristionchus pacificus are extremely successful model organisms for comparative biology. Several studies have shown that phenotypic novelty but also conserved processes are controlled by taxon-r…
View article: Predictable and stable epimutations induced during clonal propagation with embryonic transcription factors
Predictable and stable epimutations induced during clonal propagation with embryonic transcription factors Open
Although clonal propagation is frequently used in commercial plant breeding and plant biotechnology programs because it minimizes genetic variation, it is not uncommon to observe clonal plants with stable phenotypic changes, a phenomenon k…
View article: Homozygosity at its Limit: Inbreeding Depression in Wild<i>Arabidopsis arenosa</i>Populations
Homozygosity at its Limit: Inbreeding Depression in Wild<i>Arabidopsis arenosa</i>Populations Open
New combinations of genetic material brought together through hybridization can lead to unfit offspring as a result of outbreeding or inbreeding depression. In selfing plants such as Arabidopsis thaliana , outbreeding depression is typical…
View article: A Truncated Singleton NLR Causes Hybrid Necrosis in <i>Arabidopsis thaliana</i>
A Truncated Singleton NLR Causes Hybrid Necrosis in <i>Arabidopsis thaliana</i> Open
Hybrid necrosis in plants arises from conflict between divergent alleles of immunity genes contributed by different parents, resulting in autoimmunity. We investigate a severe hybrid necrosis case in Arabidopsis thaliana, where the hybrid …
View article: A singleton NLR of recent origin causes hybrid necrosis in<i>Arabidopsis thaliana</i>
A singleton NLR of recent origin causes hybrid necrosis in<i>Arabidopsis thaliana</i> Open
Hybrid necrosis in plants arises from conflict between divergent alleles of immunity genes contributed by different parents, resulting in autoimmunity. We investigate a severe hybrid necrosis case in Arabidopsis thaliana , where the hybrid…