Michal Babinski
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View article: Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource
Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource Open
Accessible and easy-to-use standardized bioinformatics workflows are necessary to advance microbiome research from observational studies to large-scale, data-driven approaches. Standardized multi-omics data enables comparative studies, dat…
View article: wwLearning the language of proteins and predicting the impact of mutations
wwLearning the language of proteins and predicting the impact of mutations Open
Mutations in proteins directly impact their structure and function. Understanding the “language” of proteins, or the sequence to function (genotype-phenotype) relationship has many real-world applications. One set of applications includes …
View article: Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts Open
Domestication of cranberry and blueberry began in the United States in the early 1800s and 1900s, respectively, and in part owing to their flavors and health-promoting benefits are now cultivated and consumed worldwide. The industry contin…
View article: Identification of mobile genetic elements with geNomad
Identification of mobile genetic elements with geNomad Open
View article: Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts Open
Domestication of cranberry and blueberry began in the United States in the early 1800s and 1900s, respectively, and in part owing to their flavors and health-promoting benefits are now cultivated and consumed worldwide. The industry contin…
View article: A centralized resource for bacterial–fungal interactions research
A centralized resource for bacterial–fungal interactions research Open
View article: You can move, but you can't hide: identification of mobile genetic elements with geNomad
You can move, but you can't hide: identification of mobile genetic elements with geNomad Open
Identifying and characterizing mobile genetic elements (MGEs) in sequencing data is essential for understanding their diversity, ecology, biotechnological applications, and impact on public health. Here, we introduce geNomad, a classificat…
View article: Stressed Mothers Receiving Infant Mental Health-Based Early Head Start Increase in Mind-Mindedness
Stressed Mothers Receiving Infant Mental Health-Based Early Head Start Increase in Mind-Mindedness Open
Maternal mind-mindedness is a characteristic of supportive parenting and contributes to many positive social–emotional outcomes in early childhood. However, there is limited knowledge of mind-mindedness among parents experiencing parenting…
View article: Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale
Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale Open
The nascent field of microbiome science is transitioning from a descriptive approach of cataloging taxa and functions present in an environment to applying multi-omics methods to investigate microbiome dynamics and function. A large number…
View article: The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource
The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource Open
The National Microbiome Data Collaborative (NMDC) Data Portal supports microbiome multi-omics data exploration and access through an integrated, distributed data framework aligned with the FAIR (Findable, Accessible, Interoperable and Reus…