Zhenmin Bao
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View article: Efficient induction of autotriploid bay scallop Argopecten irradians irradians with growth advantages in larvae and adults
Efficient induction of autotriploid bay scallop Argopecten irradians irradians with growth advantages in larvae and adults Open
View article: Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions
Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions Open
Multi-omics analyses have significantly advanced the understanding of complex marine microbial communities and their interactions. Despite notable progress from recent large-scale ocean meta-analysis efforts, the effective integration and …
View article: Genome-wide investigation of the dmrt gene family reveals new insight into the gonad development in Plectropomus leopardus: dmrt2a regulate the development of oocytes
Genome-wide investigation of the dmrt gene family reveals new insight into the gonad development in Plectropomus leopardus: dmrt2a regulate the development of oocytes Open
Background Plectropomus leopardus is a hermaphrodite fish with a unique pattern of gonadal development. However, the molecular mechanism of sexual differentiation in this species remains unclear. The Doublesex and Mab-3 related transcripti…
View article: Genome-wide association study reveals the role of Lox4 in shell morphology of Mulinia lateralis
Genome-wide association study reveals the role of Lox4 in shell morphology of Mulinia lateralis Open
View article: Integrative genomics reveals PDE11A and SAAL are key regulators of growth in Pacific white shrimp (Penaeus vannamei)
Integrative genomics reveals PDE11A and SAAL are key regulators of growth in Pacific white shrimp (Penaeus vannamei) Open
View article: Re-annotation improved large-scale assembly of the reef-building coral Acropora intermedia
Re-annotation improved large-scale assembly of the reef-building coral Acropora intermedia Open
Acropora corals, primary reef-builders providing habitat for numerous marine species, now face novel survival pressures due to environmental changes. Acropora intermedia (Brook 1891), a significant contributor to the vibrant ecosystems of …
View article: The chromosome-level genome assembly and annotation of the silver-lipped pearl oyster, Pinctada maxima
The chromosome-level genome assembly and annotation of the silver-lipped pearl oyster, Pinctada maxima Open
The silver-lipped pearl oyster (Pinctada maxima) is a valuable tropical aquaculture species, playing a crucial economic role in the global pearl industry. However, the lack of genomic reference limits our in-depth understanding of this spe…
View article: The complete chloroplast genome of <i>Betula chinensis</i> Maxim (Chinese birch)
The complete chloroplast genome of <i>Betula chinensis</i> Maxim (Chinese birch) Open
View article: Automated underwater plectropomus leopardus phenotype measurement through cylinder
Automated underwater plectropomus leopardus phenotype measurement through cylinder Open
Accurate and non-invasive measurement of fish phenotypic characteristics in underwater environments is crucial for advancing aquaculture. Traditional manual methods require significant labor to anesthetize and capture fish, which not only …
View article: Core histone families of mollusca: systematic identification, evolutionary insights, and functional analysis
Core histone families of mollusca: systematic identification, evolutionary insights, and functional analysis Open
View article: Widespread presence of bone marrow–like hematopoietic stem cell niche in invertebrate skeletons
Widespread presence of bone marrow–like hematopoietic stem cell niche in invertebrate skeletons Open
Skeletal harboring of hematopoietic stem cells (HSCs) is generally considered as vertebrate-specific innovation during water-to-land transition. However, this long-standing view has not been rigorously evaluated as hematopoietic sites rema…
View article: Complete mitochondrial genome and phylogenetic analysis of <i>Podabacia crustacea</i> (Pallas, 1766)
Complete mitochondrial genome and phylogenetic analysis of <i>Podabacia crustacea</i> (Pallas, 1766) Open
The coral genus Podabacia serves as a bioindicator of offshore environments. This study presents an updated complete mitochondrial genome of Podabacia crustacea (Pallas, 1766). The final mitogenome spans 17,009 bp in length a…
View article: Effects of Methyl Farnesoate on the Growth and Antioxidant Capacity of Neocaridina denticulata
Effects of Methyl Farnesoate on the Growth and Antioxidant Capacity of Neocaridina denticulata Open
Sesquiterpenoid hormones are widely present in arthropods and play crucial roles in growth, molting and reproduction. Methyl farnesoate (MF) functions similarly to juvenile hormone (JH) in crustaceans, playing a broad regulatory role in th…
View article: Healthy and moribund Zhikong scallops ( <i>Chlamys farreri</i> ) developed different viral communities during a mass mortality event
Healthy and moribund Zhikong scallops ( <i>Chlamys farreri</i> ) developed different viral communities during a mass mortality event Open
Viral assemblages of scallops are still relatively unknown. Here, metagenomic analysis was used to study virus communities in the gut of scallops to establish the first scallop virome data set (SVD); this contains 7,447 viral operational t…
View article: Complete mitochondrial genome of the brain coral <i>Platygyra daedalea</i> (Ellis & Solander, 1786)
Complete mitochondrial genome of the brain coral <i>Platygyra daedalea</i> (Ellis & Solander, 1786) Open
Platygyra daedalea Ellis & Solander, 1786, is a dominant species within the world's warmest reefs, making it a critical model for investigating coral stress resistance and adaptive evolutionary mechanisms. This study presents the fi…
View article: Integrated Transcriptomic and Epigenomic Analysis Reveals Mechanisms Underlying Melanotic Spot Formation in Red Tilapia (Oreochromis spp.)
Integrated Transcriptomic and Epigenomic Analysis Reveals Mechanisms Underlying Melanotic Spot Formation in Red Tilapia (Oreochromis spp.) Open
Red tilapia is highly valued as a premium variety in Asia due to its vibrant red skin coloration. However, during aquaculture production, irregular black pigmentation (melanotic spots) frequently appears on the skin of some individuals, si…
View article: Single-cell transcriptomic dynamics of scallop heart reveals the heterogeneous response to heat stress
Single-cell transcriptomic dynamics of scallop heart reveals the heterogeneous response to heat stress Open
Background Animals with open circulatory systems are highly vulnerable to environmental temperature fluctuations, making them particularly threatened by global warming. However, research on the cellular heterogeneity of heart responses to …
View article: Development of reliable transgenic systems for inducing in vitro-cultured hematopoietic cell proliferation in Cherax quadricarinatus
Development of reliable transgenic systems for inducing in vitro-cultured hematopoietic cell proliferation in Cherax quadricarinatus Open
View article: Single-cell RNA sequencing reveals cellular heterogeneity and gonadal niche interactions in the hermaphroditic scallop Argopecten irradians
Single-cell RNA sequencing reveals cellular heterogeneity and gonadal niche interactions in the hermaphroditic scallop Argopecten irradians Open
View article: High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829)
High-quality genome assembly of the azooxanthellate coral Tubastraea coccinea (Lesson, 1829) Open
Coral reefs are among the most biodiverse and economically significant ecosystems globally, yet they are increasingly degrading due to global climate change and local human activities. The sun coral Tubastraea coccinea (T. coccinea) an obl…
View article: Marine evo-devo: New frontiers from Lophotrochozoa
Marine evo-devo: New frontiers from Lophotrochozoa Open
View article: PLDNet: real-time Plectropomus leopardus disease recognition
PLDNet: real-time Plectropomus leopardus disease recognition Open
In Plectropomus leopardus , Vibrio disease and Hirudo parasitic disease are relatively common. Timely recognition of these diseases can improve the survival rate of Plectropomus leopardus and prevent their spread. However, early-stage dise…
View article: The Effects of Acute Temperature Changes on Transcriptomic Responses in the Liver of Leopard Coral Groupers (Plectropomus leopardus)
The Effects of Acute Temperature Changes on Transcriptomic Responses in the Liver of Leopard Coral Groupers (Plectropomus leopardus) Open
The leopard coral grouper (Plectropomus leopardus) is a commercially significant tropical marine species. With the ongoing effects of global climate change, increasing attention has been focused on leopard coral grouper’s susceptibility to…
View article: Molecular and Physiological Responses of Litopenaeus vannamei to Nitrogen and Phosphorus Stress
Molecular and Physiological Responses of Litopenaeus vannamei to Nitrogen and Phosphorus Stress Open
Environmental stressors such as nitrogen and phosphorus play a critical role in regulating the growth and physiological functions of Litopenaeus vannamei, a key species in aquaculture. This study investigates the effects of nitrogen and ph…
View article: Insights from the single-cell level: lineage trajectory and somatic-germline interactions during spermatogenesis in dwarf surfclam Mulinia lateralis
Insights from the single-cell level: lineage trajectory and somatic-germline interactions during spermatogenesis in dwarf surfclam Mulinia lateralis Open
This study provides a comprehensive single-cell transcriptome landscape of the gonad, which will contribute to the understanding of germ cell fate transition during spermatogenesis, and the development of germ cell manipulation technologie…
View article: Hepatic and intestinal insights into the molecular mechanisms of dietary Antarctic krill-induced body color differentiation in Plectropomus leopardus
Hepatic and intestinal insights into the molecular mechanisms of dietary Antarctic krill-induced body color differentiation in Plectropomus leopardus Open
Antarctic krill (Euphausia superba), which is rich in astaxanthin, has been widely utilized as a dietary supplement in fish aquaculture. Our study was to feed juvenile leopard coral grouper (Plectropomus leopardus) a diet containing 50 % A…
View article: Population structure and genetic diversity of Toona sinensis revealed by whole-genome resequencing
Population structure and genetic diversity of Toona sinensis revealed by whole-genome resequencing Open
Objectives Toona sinensis , commonly known as Chinese toon, is a perennial woody plant with significant economic and ecological importance. This study employed whole-genome resequencing of 180 T . sinensis samples collected from Shandong t…
View article: Epigenetic regulation and maternal-to-zygotic transition in dwarf surf clam (<i>Mulinia lateralis</i>): Insights from chromatin state profiling and transcriptomics
Epigenetic regulation and maternal-to-zygotic transition in dwarf surf clam (<i>Mulinia lateralis</i>): Insights from chromatin state profiling and transcriptomics Open
Bivalve mollusks represent a taxonomically and economically significant clade within Mollusca. However, the regulatory mechanisms governing their embryonic development remain poorly characterized. The dwarf surf clam ( Mulinia lateralis…
View article: Hepatopancreas-Ovary Crosstalk Dynamically Modulates Fatty Acid Metabolism During Ovarian Maturation in Litopenaeus vannamei
Hepatopancreas-Ovary Crosstalk Dynamically Modulates Fatty Acid Metabolism During Ovarian Maturation in Litopenaeus vannamei Open
View article: Genome-Wide Association Studiy Identifies Key Snp and Glutamate Receptor 4 Linked to Heat Tolerance in Zhikong Scallop Chlamys Farreri
Genome-Wide Association Studiy Identifies Key Snp and Glutamate Receptor 4 Linked to Heat Tolerance in Zhikong Scallop Chlamys Farreri Open