Minjin Han
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View article: Complete genome sequence of <i>Oscillospiraceae</i> bacterium strain MB08-C2-2, isolated from the feces of the black soldier fly larvae
Complete genome sequence of <i>Oscillospiraceae</i> bacterium strain MB08-C2-2, isolated from the feces of the black soldier fly larvae Open
Here, we report the complete genome sequence of Oscillospiraceae bacterium MB08-C2-2 (=BCRC 81394), isolated from feces of black soldier fly ( Hermetia illucens ) larvae, comprising 3,292,498 bp, a GC content of 49.67%, and identification …
View article: Silk_40K SNP array facilitates the genomic prediction of complex traits in silkworm (Bombyx mori)
Silk_40K SNP array facilitates the genomic prediction of complex traits in silkworm (Bombyx mori) Open
Silk_40K array is the first whole-genome SNP chip for silkworm. Based on this, two new genes controlling silk yield were identified, providing new insights into the genetic architecture of silk yield. We also demonstrated for the first tim…
View article: Complete genome sequence of <i>Propionimicrobium</i> sp. PCR01-08-3, isolated from the feces of the <i>Tenebrio molitor</i> larvae fed with styrofoam
Complete genome sequence of <i>Propionimicrobium</i> sp. PCR01-08-3, isolated from the feces of the <i>Tenebrio molitor</i> larvae fed with styrofoam Open
The gut microbiota of Tenebrio molitor has attracted attention for its potential in solving plastic waste problems. Here, we report the complete genome sequence of Propionimicrobium sp. PCR01-08-3, isolated from the feces of Tenebrio molit…
View article: Chromosome-Level Genome and Variation Map of Eri Silkworm Samia cynthia ricini
Chromosome-Level Genome and Variation Map of Eri Silkworm Samia cynthia ricini Open
The eri silkworm Samia cynthia ricini (S. ricini) is an economically and scientifically significant lepidopteran species, though its genomic resources have remained limited. Here, we present a chromosome-level genome assembly for S. ricini…
View article: <i>Doublesex</i> gene in <i>Bombyx mori</i>: <scp>CRISPR</scp>‐mediated female‐to‐male sex reversal through exon skipping
<i>Doublesex</i> gene in <i>Bombyx mori</i>: <span>CRISPR</span>‐mediated female‐to‐male sex reversal through exon skipping Open
BACKGROUND Sex control technology has great potential to improve the efficiency of economic insect utilization and integrated pest management by enabling targeted population suppression or elimination. The silkworm ( Bombyx mori ), a lepid…
View article: Characterization of Spectrin Family Genes and Their Evolutionary Roles in Domestication and Breeding of the Silkworm Bombyx mori
Characterization of Spectrin Family Genes and Their Evolutionary Roles in Domestication and Breeding of the Silkworm Bombyx mori Open
The spectrin family genes play critical roles in cytoskeletal organization and cellular integrity, yet their evolutionary and functional significance in non-classical model organisms remains poorly explored. Here, we systematically identif…
View article: Genome-Wide Identification and Analysis of the MYC Gene Family in Cotton: Evolution and Expression Profiles During Normal Growth and Stress Response
Genome-Wide Identification and Analysis of the MYC Gene Family in Cotton: Evolution and Expression Profiles During Normal Growth and Stress Response Open
Background: The gene family of myelomatosis (MYC), serving as a transcription factor in the jasmonate (JA) signaling pathway, displays a significant level of conservation across diverse animal and plant species. Cotton is the most widely u…
View article: Multiple independent origins of the female W chromosome in moths and butterflies
Multiple independent origins of the female W chromosome in moths and butterflies Open
Lepidoptera, the most diverse group of insects, exhibit female heterogamy (Z0 or ZW), which is different from most other insects (male heterogamy, XY). Previous studies suggest a single origin of the Z chromosome. However, the origin of th…
View article: Development and validation of the hospice professional coping scale among Chinese nurses
Development and validation of the hospice professional coping scale among Chinese nurses Open
Background Hospice care professionals often experience trauma patient deaths and multiple patient deaths in a short period of time (more so than other nurses). This repeated exposure to the death process and the death of patients leads to …
View article: Maternal dominance contributes to subgenome differentiation in allopolyploid fishes
Maternal dominance contributes to subgenome differentiation in allopolyploid fishes Open
Teleost fishes, which are the largest and most diverse group of living vertebrates, have a rich history of ancient and recent polyploidy. Previous studies of allotetraploid common carp and goldfish (cyprinids) reported a dominant subgenome…
View article: SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data
SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data Open
The silkworm Bombyx mori is a domesticated insect that serves as an animal model for research and agriculture. The silkworm super-pan-genome dataset, which we published last year, is a unique resource for the study of global genomic divers…
View article: Mutation Rate and Spectrum of the Silkworm in Normal and Temperature Stress Conditions
Mutation Rate and Spectrum of the Silkworm in Normal and Temperature Stress Conditions Open
Mutation rate is a crucial parameter in evolutionary genetics. However, the mutation rate of most species as well as the extent to which the environment can alter the genome of multicellular organisms remain poorly understood. Here, we use…
View article: Population Structure, Demographic History, and Adaptation of Giant Honeybees in China Revealed by Population Genomic Data
Population Structure, Demographic History, and Adaptation of Giant Honeybees in China Revealed by Population Genomic Data Open
There have been many population-based genomic studies on human-managed honeybees (Apis mellifera and Apis cerana), but there has been a notable lack of analysis with regard to wild honeybees, particularly in relation to their evolutionary …
View article: Deciphering the Genetic Basis of Silkworm Cocoon Colors Provides New Insights into Biological Coloration and Phenotypic Diversification
Deciphering the Genetic Basis of Silkworm Cocoon Colors Provides New Insights into Biological Coloration and Phenotypic Diversification Open
The genetic basis of phenotypic variation is a long-standing concern of evolutionary biology. Coloration has proven to be a visual, easily quantifiable, and highly tractable system for genetic analysis and is an ever-evolving focus of biol…
View article: A Blueprint of Microstructures and Stage-Specific Transcriptome Dynamics of Cuticle Formation in Bombyx mori
A Blueprint of Microstructures and Stage-Specific Transcriptome Dynamics of Cuticle Formation in Bombyx mori Open
Insect cuticle is critical for the environmental adaptability and insecticide resistance of insects. However, there is no clear understanding of the structure and protein components of the cuticle during each developmental stage of holomet…
View article: Reference genomes of 545 silkworms enable high-throughput exploring genotype-phenotype relationships
Reference genomes of 545 silkworms enable high-throughput exploring genotype-phenotype relationships Open
The silkworm Bombyx mori is a domestic insect for silk production and a lepidopteran model. The currently available genomes limit a full understanding of its genetic and phenotypic diversity. Here we assembled long-read genomes of 545 dome…
View article: The Landscapes of Full-Length Transcripts and Splice Isoforms as Well as Transposons Exonization in the Lepidopteran Model System, Bombyx mori
The Landscapes of Full-Length Transcripts and Splice Isoforms as Well as Transposons Exonization in the Lepidopteran Model System, Bombyx mori Open
The domesticated silkworm, Bombyx mori , is an important model system for the order Lepidoptera. Currently, based on third-generation sequencing, the chromosome-level genome of Bombyx mori has been released. However, its transcripts were m…
View article: Comparative Transcriptome Analysis Reveals bmo-miR-6497-3p Regulate Circadian Clock Genes during the Embryonic Diapause Induction Process in Bivoltine Silkworm
Comparative Transcriptome Analysis Reveals bmo-miR-6497-3p Regulate Circadian Clock Genes during the Embryonic Diapause Induction Process in Bivoltine Silkworm Open
Diapause is one of the survival strategies of insects for confronting adverse environmental conditions. Bombyx mori displays typical embryonic diapause, and offspring diapause depends on the incubation environment of the maternal embryo in…
View article: Identification, expression, and artificial selection of silkworm epigenetic modification enzymes
Identification, expression, and artificial selection of silkworm epigenetic modification enzymes Open
Background Understanding the genetic basis of phenotype variations during domestication and breeding is of great interest. Epigenetics and epigenetic modification enzymes (EMEs) may play a role in phenotypic variations; however, no compreh…
View article: Cocoonase is indispensable for Lepidoptera insects breaking the sealed cocoon
Cocoonase is indispensable for Lepidoptera insects breaking the sealed cocoon Open
Many insects spin cocoons to protect the pupae from unfavorable environments and predators. After emerging from the pupa, the moths must escape from the sealed cocoons. Previous works identified cocoonase as the active enzyme loosening the…
View article: The beta-1, 4-N-acetylglucosaminidase 1 gene, selected by domestication and breeding, is involved in cocoon construction of Bombyx mori
The beta-1, 4-N-acetylglucosaminidase 1 gene, selected by domestication and breeding, is involved in cocoon construction of Bombyx mori Open
Holometabolous insects have distinct larval, pupal, and adult stages. The pupal stage is typically immobile and can be subject to predation, but cocoon offers pupal protection for many insect species. The cocoon provides a space in which t…
View article: Flight Muscle and Wing Mechanical Properties are Involved in Flightlessness of the Domestic Silkmoth, Bombyx mori
Flight Muscle and Wing Mechanical Properties are Involved in Flightlessness of the Domestic Silkmoth, Bombyx mori Open
Flight loss has occurred in many winged insect taxa. The flightless silkmoth Bombyx mori, is domesticated from the wild silkmoth, Bombyx mandarina, which can fly. In this paper, we studied morphological characteristics attributed to flight…
View article: Additional file 2 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes
Additional file 2 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes Open
Additional file 2 : Table S2. Genome-wide identification of BmEMEs and their orthologues in Caenorhabditis elegans, Drosophila melanogaster, Mus musculus and Homo sapiens.
View article: Additional file 3 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes
Additional file 3 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes Open
Additional file 3 : Table S3. The RNA-seq data of EMEs in silkworm, Bombyx mori (A), Drosophila melanogaster (B) and Mus musculus (C).
View article: Additional file 11 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes
Additional file 11 of Identification, expression, and artificial selection of silkworm epigenetic modification enzymes Open
Additional file 11 : Table S6. Primers used in real-time PCR analysis.