Mirko Celii
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View article: High-Quality PacBio Genome Assembly of <i>Populus alba</i> L. “Villafranca”
High-Quality PacBio Genome Assembly of <i>Populus alba</i> L. “Villafranca” Open
This study presents the high-quality genome assemblies for Populus alba L. “Villafranca” using PacBio HiFi sequencing. The assembly span 498.95 Mb, an N50 of 18.18 Mb and largest contig of 52.03 Mb. BUSCO analysis revealed genome completen…
View article: PacBio genome assembly of Olea europaea L. subsp. europaea cultivars Frantoio and Leccino
PacBio genome assembly of Olea europaea L. subsp. europaea cultivars Frantoio and Leccino Open
We present two high-quality genome assemblies for Olea europaea L. cultivars 'Frantoio' and 'Leccino,' leveraging PacBio HiFi sequencing to achieve approximately 30 × genome coverage for each cultivar. The assemblies span 1.18 Gbp and 1.43…
View article: PRC2-EZH1 contributes to circadian gene expression by orchestrating chromatin states and RNA polymerase II complex stability
PRC2-EZH1 contributes to circadian gene expression by orchestrating chromatin states and RNA polymerase II complex stability Open
Circadian rhythmicity of gene expression is a conserved feature of cell physiology. This involves fine-tuning between transcriptional and post-transcriptional mechanisms and strongly depends on the metabolic state of the cell. Together the…
View article: The gyrfalcon (<i>Falco rusticolus</i>) genome
The gyrfalcon (<i>Falco rusticolus</i>) genome Open
High-quality genome assemblies are characterized by high-sequence contiguity, completeness, and a low error rate, thus providing the basis for a wide array of studies focusing on natural species ecology, conservation, evolution, and popula…
View article: Stress responses and epigenomic instability mark the loss of somatic embryogenesis competence in grapevine
Stress responses and epigenomic instability mark the loss of somatic embryogenesis competence in grapevine Open
Somatic embryogenesis (SE) represents the most appropriate tool for next-generation breeding methods in woody plants such as grapevine (Vitis vinifera L.). However, in this species, the SE competence is strongly genotype-dependent and the …
View article: Open chromatin in grapevine marks candidate CREs and with other chromatin features correlates with gene expression
Open chromatin in grapevine marks candidate CREs and with other chromatin features correlates with gene expression Open
Summary Vitis vinifera is an economically important crop and a useful model in which to study chromatin dynamics. In contrast to the small and relatively simple genome of Arabidopsis thaliana , grapevine contains a complex genome of 487 Mb…
View article: Transdifferentiation of Mouse Embryonic Fibroblasts into Dopaminergic Neurons Reactivates LINE-1 Repetitive Elements
Transdifferentiation of Mouse Embryonic Fibroblasts into Dopaminergic Neurons Reactivates LINE-1 Repetitive Elements Open
View article: Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties
Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties Open
Summary The transcriptional regulatory structure of plant genomes is still relatively unexplored, and little is known about factors that influence expression variation in plants. We used a genetic system consisting of 10 heterozygous grape…