Mostafa Y. Abdel‐Glil
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View article: Chromosome-level genome assembly of Trichomonas vaginalis strain IR-78 (ATCC 50138)
Chromosome-level genome assembly of Trichomonas vaginalis strain IR-78 (ATCC 50138) Open
View article: Clostridioides difficile in Honduras: a genomic and phenotypic characterization of the persistent RT027 and emergent RT002 genotypes
Clostridioides difficile in Honduras: a genomic and phenotypic characterization of the persistent RT027 and emergent RT002 genotypes Open
Taken together, these findings highlight the presence of persistent and community-relevant C. difficile strains, and the consequent need to adopt and develop interventions to control and prevent CDI in the Honduran national health system w…
View article: Whole genome sequence analysis of Microsporum canis: A study based on animal strains isolated from India
Whole genome sequence analysis of Microsporum canis: A study based on animal strains isolated from India Open
View article: High intra-laboratory reproducibility of nanopore sequencing in bacterial species underscores advances in its accuracy
High intra-laboratory reproducibility of nanopore sequencing in bacterial species underscores advances in its accuracy Open
Nanopore sequencing is a third-generation technology known for its portability, real-time analysis and ability to generate long reads. It has great potential for use in clinical diagnostics, but thorough validation is required to address a…
View article: Dataset for clostyper
Dataset for clostyper Open
Clostyper is a Snakemake-based tool designed to automate the analysis process of Clostridia genomes. Detailed information about Clostyper, including its development rationale, available analyses, installation guidelines and usage instructi…
View article: Unwrapping the phytofabrication of bimetallic silver–selenium nanoparticles: Antibacterial, Anti-virulence (Targeting magA and toxA genes), anti-diabetic, antioxidant, anti-ovarian, and anti-prostate cancer activities
Unwrapping the phytofabrication of bimetallic silver–selenium nanoparticles: Antibacterial, Anti-virulence (Targeting magA and toxA genes), anti-diabetic, antioxidant, anti-ovarian, and anti-prostate cancer activities Open
The current study successfully biosynthesized bimetallic silver–selenium nanoparticles (Ag–Se NPs) using an extract from Salvia hispanica seeds. Our research revealed that Salvia hispanica seed extract is a substantial source of various ph…
View article: Draft genomes of the bile duct microbiome strains <i>Klebsiella pneumoniae</i> and <i>Enterococcus lactis</i> isolated from bilioenteric drainages with biofilm-forming abilities
Draft genomes of the bile duct microbiome strains <i>Klebsiella pneumoniae</i> and <i>Enterococcus lactis</i> isolated from bilioenteric drainages with biofilm-forming abilities Open
We describe the genetic properties of two strains isolated from the elusive bile duct microbiome from solid organ transplant patients. Bacterial strains Enterococcus lactis (MS-STENT-08-E-001) and Klebsiella pneumoniae (MS-STENT-01-M-001) …
View article: Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis
Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis Open
View article: Genomic study of European Clostridioides difficile ribotype 002/sequence type 8
Genomic study of European Clostridioides difficile ribotype 002/sequence type 8 Open
Clostridioides difficile has significant clinical importance as a leading cause of healthcare-associated infections, with symptoms ranging from mild diarrhoea to severe colitis, and possible life-threatening complications. C. difficile rib…
View article: Antimicrobial resistance of Clostridioides difficile in veterinary medicine around the world: A scoping review of minimum inhibitory concentrations
Antimicrobial resistance of Clostridioides difficile in veterinary medicine around the world: A scoping review of minimum inhibitory concentrations Open
View article: First Description of Mergibacter septicus Isolated from a Common Tern (Sterna hirundo) in Germany
First Description of Mergibacter septicus Isolated from a Common Tern (Sterna hirundo) in Germany Open
Mergibacter septicus (M. septicus), previously known as Bisgaard Taxon 40, is a recently described species within the Pasteurellaceae family. In this study, we present a M. septicus strain isolated from a common tern (Sterna hirundo) chick…
View article: Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany"
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" Open
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" by Abdel-Glil Mostafa Y., Hotzel Helmut, Tomaso Herbert, Didelot Xavier, Brandt Christian, Seyboldt Christian, Linde Jörg, …
View article: Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany
Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany Open
Campylobacter fetus subsp. venerealis ( Cfv ) causes bovine genital campylobacteriosis (BGC), a World Organization for Animal Health (WOAH)-listed trade-relevant disease characterized by severe reproductive losses, such as infertility, ear…
View article: Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany"
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" Open
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" by Abdel-Glil Mostafa Y., Hotzel Helmut, Tomaso Herbert, Didelot Xavier, Brandt Christian, Seyboldt Christian, Linde Jörg, …
View article: Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany"
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" Open
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" by Abdel-Glil Mostafa Y., Hotzel Helmut, Tomaso Herbert, Didelot Xavier, Brandt Christian, Seyboldt Christian, Linde Jörg, …
View article: Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany"
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" Open
Supplementary dataset to publication: "Genomic epidemiology of Campylobacter fetus subsp. venerealis from Germany" by Abdel-Glil Mostafa Y., Hotzel Helmut, Tomaso Herbert, Didelot Xavier, Brandt Christian, Seyboldt Christian, Linde Jörg, S…
View article: Clostridioides difficile in South American Camelids in Germany: First Insights into Molecular and Genetic Characteristics and Antimicrobial Resistance
Clostridioides difficile in South American Camelids in Germany: First Insights into Molecular and Genetic Characteristics and Antimicrobial Resistance Open
DOI: 10.3390/antibiotics12010086 Little is known about zoonotic pathogens and their antimicrobial resistance in South American camelids (SAC) in Germany including Clostridioides (C.) difficile. The aim of this study was to inves…
View article: Clostridioides difficile in South American Camelids in Germany: First Insights into Molecular and Genetic Characteristics and Antimicrobial Resistance
Clostridioides difficile in South American Camelids in Germany: First Insights into Molecular and Genetic Characteristics and Antimicrobial Resistance Open
Little is known about zoonotic pathogens and their antimicrobial resistance in South American camelids (SAC) in Germany including Clostridioides (C.) difficile. The aim of this study was to investigate prevalence, molecular characteristics…
View article: Deliverable D-JRP15–FED-AMR-WP3.2: Overview of genetic overlap between human and non-human Clostridiodes difficile isolates
Deliverable D-JRP15–FED-AMR-WP3.2: Overview of genetic overlap between human and non-human Clostridiodes difficile isolates Open
This deliverable and the associated task aims to contribute to increase knowledge regarding the true impact of C. difficile as a zoonotic agent and its transmission networks, by evaluating the extent of genetic overlap and potential transm…
View article: D-JRP15–FED-AMR-WP3.3 Deliverable 3.3 Classification of pig farm compartments according to their role in the epidemiology of Clostridioides difficile (task 3.4)
D-JRP15–FED-AMR-WP3.3 Deliverable 3.3 Classification of pig farm compartments according to their role in the epidemiology of Clostridioides difficile (task 3.4) Open
In order to assess C. difficile/AMR dissemination between humans, animals and the environment, studies were conducted on samples from 4 countries (2 HOALs Portugal, Austria, 1 agricultural facility Estonia, single compartments Ire…
View article: Tracking the distribution, genetic diversity and lineage of <i>Brucella melitensis</i> recovered from humans and animals in Egypt based on core‐genome SNP analysis and in silico MLVA‐16
Tracking the distribution, genetic diversity and lineage of <i>Brucella melitensis</i> recovered from humans and animals in Egypt based on core‐genome SNP analysis and in silico MLVA‐16 Open
Brucellosis is one of the most common neglected zoonotic diseases globally, with a public health significance and a high economic loss in the livestock industry caused by the bacteria of the genus Brucella. In this study, 136 Egyptian Bruc…
View article: Identification of Universally Applicable and Species-Specific Marker Peptides for Bacillus anthracis
Identification of Universally Applicable and Species-Specific Marker Peptides for Bacillus anthracis Open
Anthrax is a zoonotic infection caused by the bacterium Bacillus anthracis (BA). Specific identification of this pathogen often relies on targeting genes located on two extrachromosomal plasmids, which represent the major pathogenicity fac…
View article: Core Genome Multilocus Sequence Typing Scheme for Improved Characterization and Epidemiological Surveillance of Pathogenic Brucella
Core Genome Multilocus Sequence Typing Scheme for Improved Characterization and Epidemiological Surveillance of Pathogenic Brucella Open
Brucellosis poses a significant burden to human and animal health worldwide. Robust and harmonized molecular epidemiological approaches and population studies that include routine disease screening are needed to efficiently track the origi…
View article: Dataset for the clostyper software
Dataset for the clostyper software Open
<p><em><strong>Clostyper </strong></em>is a Snakemake-based tool designed to automate the analysis process of Clostridial genomes in a highly customizable manner, tailoring tasks to clinically relevant species…
View article: The Bacillus antharcis cgMLST scheme and the typing results of B. antharcis strains produced with ChewBBACA.
The Bacillus antharcis cgMLST scheme and the typing results of B. antharcis strains produced with ChewBBACA. Open
The folder contains the Bacillus antharcis cgMLST genes and the typing results of B. anthracis strains. The schema was originally created with SeqSphere and formatted for use with the chewBBACA software as an alternative comm…
View article: First Comparative Analysis of Clostridium septicum Genomes Provides Insights Into the Taxonomy, Species Genetic Diversity, and Virulence Related to Gas Gangrene
First Comparative Analysis of Clostridium septicum Genomes Provides Insights Into the Taxonomy, Species Genetic Diversity, and Virulence Related to Gas Gangrene Open
Clostridium septicum is a Gram-positive, toxin-producing, and spore-forming bacterium that is recognized, together with C. perfringens , as the most important etiologic agent of progressive gas gangrene. Clostridium septicum infections are…
View article: Phylogenetic Relatedness and Genome Structure of Yersinia ruckeri Revealed by Whole Genome Sequencing and a Comparative Analysis
Phylogenetic Relatedness and Genome Structure of Yersinia ruckeri Revealed by Whole Genome Sequencing and a Comparative Analysis Open
Yersinia ruckeri is the causative agent of enteric redmouth disease (ERM), a serious infection that affects global aquaculture with high economic impact. The present study used whole genome sequences to perform a comparative analysis on 10…
View article: Establishment of a Publicly Available Core Genome Multilocus Sequence Typing Scheme for Clostridium perfringens
Establishment of a Publicly Available Core Genome Multilocus Sequence Typing Scheme for Clostridium perfringens Open
Global epidemiological surveillance of bacterial pathogens is enhanced by the availability of standard tools and sharing of typing data. The use of whole-genome sequencing has opened the possibility for high-resolution characterization of …
View article: Genome Sequence Analysis of Clostridium chauvoei Strains of European Origin and Evaluation of Typing Options for Outbreak Investigations
Genome Sequence Analysis of Clostridium chauvoei Strains of European Origin and Evaluation of Typing Options for Outbreak Investigations Open
Black quarter caused by Clostridium (C.) chauvoei is an important bacterial disease that affects cattle and sheep with high mortality. A comparative genomics analysis of 64 C. chauvoei strains, most of European origin and a few of non-Euro…
View article: Genomic Characterization of Multidrug-Resistant Salmonella Serovars Derby and Rissen From the Pig Value Chain in Vietnam
Genomic Characterization of Multidrug-Resistant Salmonella Serovars Derby and Rissen From the Pig Value Chain in Vietnam Open
Nontyphoidal Salmonella (NTS) is the most reported cause of bacterial foodborne zoonoses in Vietnam, and contaminated pork is one of the main sources of human infection. In recent years, the prevalence of NTS carrying multiple antimicrobia…