Matthias Lange
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View article: Evolving role of point-of-care ultrasound in prehospital emergency care: a narrative review
Evolving role of point-of-care ultrasound in prehospital emergency care: a narrative review Open
Point-of-care ultrasound is an emerging technology in prehospital emergency care, covering a wide range of medical and traumatic disease patterns. As an ad-hoc imaging modality, it is performed on-scene and during ground or aeromedical tra…
View article: Movie Rating Website
Movie Rating Website Open
This project introduces a dynamic movie rating website that allows users to browse, rate, and review movies across multiple genres. Designed for accessibility and engagement, the platform features an intuitive user interface, personalized …
View article: Data management in balance – a decade of balancing pragmatism, sustainability and innovation at plant research center IPK Gatersleben
Data management in balance – a decade of balancing pragmatism, sustainability and innovation at plant research center IPK Gatersleben Open
The Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben is a leading international plant science institute specializing in biodiversity and crop plant performance research. Over the last decade, all phases of the …
View article: Sustainable software development in science – insights from 20 years of Vanted
Sustainable software development in science – insights from 20 years of Vanted Open
Sustainable software development requires the software to remain accessible and maintainable over long time. This is particularly challenging in a scientific context. For example, fewer than one third of tools and platforms for biological …
View article: BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community
BrAPI v2: real-world applications for data integration and collaboration in the breeding and genetics community Open
Population growth and the impacts of climate change are placing increasing pressure on global agriculture and breeding programmes. Recent advancements in phenotyping techniques, genotyping technologies, and predictive modelling are acceler…
View article: A roadmap for a middleware as a federation service for integrative data retrieval of agricultural data
A roadmap for a middleware as a federation service for integrative data retrieval of agricultural data Open
Agriculture is confronted with several challenges such as climate change, the loss of biodiversity and stagnating productivity. The massive increasing amount of data and new digital technologies promise to overcome them, but they necessita…
View article: AGENT Guidelines for dataflow
AGENT Guidelines for dataflow Open
The AGENT project aims at integrating data from different sources (genebanks, research institutes, international archives) and types (passport, phenotypic, genomic data). These guidelines have been developed to explain the data flow within…
View article: Review identifies odorants used in neonatal clinical care but identifies need for further research
Review identifies odorants used in neonatal clinical care but identifies need for further research Open
Olfactory cues play a crucial role in early development,1 but the natural olfactory environment is fundamentally disturbed in hospitalised term and preterm infants. Physical and olfactory contact with their mother is limited and food odour…
View article: Why Do You Watch This Rough Stuff? Understanding Women's Paradoxical Pornography Preferences
Why Do You Watch This Rough Stuff? Understanding Women's Paradoxical Pornography Preferences Open
Different sources show a notable interest among women in pornographic themes related to dominance and submission, including non-consensual sexual encounters. This phenomenon has been labeled a paradox. To research factors driving the use o…
View article: Schema.org as a Lightweight Harmonization Approach for NFDI
Schema.org as a Lightweight Harmonization Approach for NFDI Open
Schema.org is a controlled vocabulary that makes it easier for web pages to describe their actual content in a semantic, structured and machine-processable way. It is recognized by major search engines and data aggregators, making it easie…
View article: ELIXIR-CONVERGE D5.5 Report on the remaining four DMP processes
ELIXIR-CONVERGE D5.5 Report on the remaining four DMP processes Open
The main objective of this deliverable is to provide resources that can assist life sciences researchers and data stewards in creating reference Data Management Plans (DMPs) for their research projects. The resources provided in this deliv…
View article: DivBrowse—interactive visualization and exploratory data analysis of variant call matrices
DivBrowse—interactive visualization and exploratory data analysis of variant call matrices Open
Background The sequencing of whole genomes is becoming increasingly affordable. In this context, large-scale sequencing projects are generating ever larger datasets of species-specific genomic diversity. As a consequence, more and more gen…
View article: PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations
PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations Open
With the ongoing cost decrease of genotyping and sequencing technologies, accurate and fast phenotyping remains the bottleneck in the utilizing of plant genetic resources for breeding and breeding research. Although cost-efficient high-thr…
View article: Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement
Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement Open
The great efforts spent in the maintenance of past diversity in genebanks are rationalized by the potential role of plant genetic resources (PGR) in future crop improvement-a concept whose practical implementation has fallen short of expec…
View article: DivBrowse – interactive visualization and exploratory data analysis of variant call matrices
DivBrowse – interactive visualization and exploratory data analysis of variant call matrices Open
Background The sequencing of whole genomes is becoming increasingly affordable. In this context large-scale sequencing projects are generating ever larger datasets of species-specific genomic diversity. As a consequence, more and more geno…
View article: On the way to plant data commons – a genotyping use case
On the way to plant data commons – a genotyping use case Open
Over the last years it has been observed that the progress in data collection in life science has created increasing demand and opportunities for advanced bioinformatics. This includes data management as well as the individual data analysi…
View article: Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR Open
In this opinion article, we discuss the formatting of files from (plant) genotyping studies, in particular the formatting of metadata in Variant Call Format (VCF) files. The flexibility of the VCF format specification facilitates its use a…
View article: From data to knowledge – big data needs stewardship, a plant phenomics perspective
From data to knowledge – big data needs stewardship, a plant phenomics perspective Open
SUMMARY The research data life cycle from project planning to data publishing is an integral part of current research. Until the last decade, researchers were responsible for all associated phases in addition to the actual research and wer…
View article: Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR Open
In this opinion article, we discuss the formatting of files from (plant) genotyping studies, in particular the formatting of (meta-) data in Variant Call Format (VCF) files. The flexibility of the VCF format specification facilitates its u…
View article: PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations
PhenoApp: A mobile tool for plant phenotyping to record field and greenhouse observations Open
With the ongoing cost decrease of genotyping and sequencing technologies, accurate and fast phenotyping remains the bottleneck in the utilizing of plant genetic resources for breeding and breeding research. Although cost-efficient high-thr…
View article: GiPS: Genomics-informed parent selection uncovers the breeding value of wheat genetic resources
GiPS: Genomics-informed parent selection uncovers the breeding value of wheat genetic resources Open
The great efforts spent in the maintenance of past diversity in genebanks are rationalized by the potential role of plant genetic resources in future crop improvement – a concept whose practical implementation has fallen short of expectati…
View article: Myth-busting the provider-user relationship for digital sequence information
Myth-busting the provider-user relationship for digital sequence information Open
Background The United Nations Convention on Biological Diversity (CBD) formally recognized the sovereign rights of nations over their biological diversity. Implicit within the treaty is the idea that mega-biodiverse countries will provide …
View article: Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature
Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature Open
Background Linking nucleotide sequence data (NSD) to scientific publication citations can enhance understanding of NSD provenance, scientific use, and reuse in the community. By connecting publications with NSD records, NSD geographical pr…
View article: Myth-busting the provider-user relationship for digital sequence information
Myth-busting the provider-user relationship for digital sequence information Open
The United Nations Convention on Biological Diversity (CBD) formally recognized the sovereign rights of nations over their biological diversity. Implicit within the treaty is the idea that mega-biodiverse countries will provide genetic res…
View article: Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature
Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature Open
Background Linking nucleotide sequence data (NSD) to scientific publication citations can enhance understanding of NSDs provenance, scientific use, and re-use in the community. By connecting publications with NSD records, NSD geographical …
View article: Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases Open
This article describes some use case studies and self-assessments of FAIR status of de.NBI services to illustrate the challenges and requirements for the definition of the needs of adhering to the FAIR (findable, accessible, interoperable …