Explanipedia

RNA‐Seq‐based gene expression analysis of seed protein and sulfur amino acid accumulation in developing pea seeds Open

Junsheng Zhou, Krishna Kishore Gali, V. B. Reddy Lachagari, Navajeet Chakravartty, Bunyamin Tar’an , et al. · 2025

This research aims at identifying candidate genes associated with the accumulation of seed protein and sulfur amino acids (SAAs) by comparing the expression profile of genes in developing seeds of pea ( Pisum sativum L.) lines. Lines were …

The denovo genome assembly of lemon grass to identify the genes in essential oil production Open

Navajeet Chakravartty, Nageswara Rao Reddy Neelapu · 2024

Lemon grass (Cymbopogon citratus L.) is a member of the Poaceae family and is famous for its culinary, cultural, cosmetic, and medicinal properties.Therefore, the present study aims to assemble the genome of the lemon grass and provide a v…

The Complete Genome Sequence of Cymbopogon citratus (Poaceae, Poales), Lemon Grass Open

Navajeet Chakravartty, Laslo Randowski, S Pirro · 2023

Cymbopogon citratus , commonly known Lemon Grass, is a tropical plant native to Maritime Southeast Asia. The species has simple, bluish-green leaves with linear white margins. Cymbopogon citratus is abundant in the Philippines and Indonesi…

The de novo genome assembly (nuclear, chloroplast, and mitochondria) of ornamental plant pygmy date palm Phoenix roebelenii Open

Navajeet Chakravartty, Nageswara Rao Reddy Neelapu · 2023

Genome Assembly and Annotation for Cymbopogon citratus Open

Navajeet Chakravartty, Nageswara Rao Reddy Neelapu · 2022

Lemon grass (Cymbopogon citratus L.) is a member of the Poaceae family and is famous for its culinary, cultural, cosmetic, and medicinal properties. Therefore, the present study aims to assemble the genome of the lemon grass and provide a …

Genome Assembly and Annotation for Phoenix roebelenii Open

Navajeet Chakravartty, Nageswara Rao Reddy Neelapu · 2022

The field of ornamental plant genomics has witnessed an increase in sequencing of whole genome of ornamental plants in the last ten years. Phoenix roebelenii (pygmy date palm) is popular ornamental plant which is grown both indoor and outd…

Identification of heat responsive genes in pea stipules and anthers through transcriptional profiling Open

Shaoming Huang, Krishna Kishore Gali, V. B. Reddy Lachagari, Navajeet Chakravartty, Rosalind Bueckert , et al. · 2021

Field pea ( Pisum sativum L.), a cool-season legume crop, is known for poor heat tolerance. Our previous work identified PR11-2 and PR11-90 as heat tolerant and susceptible lines in a recombinant inbred population. CDC Amarillo, a Canadian…

Genome‐wide miRNAs profiles of pearl millet under contrasting high vapor pressure deficit reveal their functional roles in drought stress adaptations Open

Palakolanu Sudhakar Reddy, Saurabh Gupta, Richa K. Yeshvekar, Navajeet Chakravartty, Kaliamoorthy Sivasakthi , et al. · 2021

Pearl millet ( Pennisetum glaucum [L.] R. Br.) is an important crop capable of growing in harsh and marginal environments, with the highest degree of tolerance to drought and heat stresses among cereals. Diverse germplasm of pearl millet s…

Identification of heat responsive genes in pea stipules and anthers through transcriptional profiling Open

Shaoming Huang, Krishna K. Kishore, Reddy Lachagari, Navajeet Chakravartty, Rosalind Bueckert , et al. · 2021

Field pea ( Pisum sativum L.), a cool-season legume crop, is known for poor heat tolerance. Our previous work identified PR11-2 and PR11-90 as heat tolerant and susceptible lines in a recombinant inbred population. CDC Amarillo, a Canadian…

Identification of heat responsive genes in pea stipules and anthers through transcriptional profiling Open

Shaoming Huang, V. B. Reddy Lachagari, Navajeet Chakravartty, Rosalind Bueckert, Bunyamin Tar’an , et al. · 2021

Field pea (Pisum sativum L.), a cool-season legume crop, is known for poor heat tolerance. Our previous work identified PR11-2 and PR11-90 as heat tolerant and susceptible lines in a recombinant inbred population. CDC Amarillo, a Canadian …

Secondary metabolites from spice and herbs as potential multitarget inhibitors of SARS-CoV-2 proteins Open

Saurabh Gupta, Vishal Singh, Pritish Kumar Varadwaj, Navajeet Chakravartty, A. V. S. Krishna Mohan Katta , et al. · 2020

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been responsible for the current global pandemic that has caused a death toll of >1.12 million worldwide and number continues to climb in several countries. Currently, there …

Stable SNP Allele Associations With High Grain Zinc Content in Polished Rice (Oryza sativa L.) Identified Based on ddRAD Sequencing Open

P. Madhu Babu, C. N. Neeraja, Santosha Rathod, K. Suman, G. Anurag Uttam , et al. · 2020

Polished rice is widely consumed staple food across the globe, however, it contains limited nutrients especially iron (Fe) and zinc (Zn). To identify promising genotypes for grain Zn, a total of 40 genotypes consisting 20 rice landraces, a…

Secondary metabolites from spice and herbs as potential multitarget inhibitors of SARS-CoV-2 proteins Open

Saurabh Gupta, Vishal Singh, Pritish Kumar Varadwaj, Navajeet Chakravartty, A. V. S. Krishna Mohan Katta , et al. · 2020

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been responsible for the current global pandemic that has caused a death toll of >1.12 million worldwide and number continues to climb in several countries. Currently, there …

Deciphering the transcriptomic insight during organogenesis in Castor (Ricinus communis L.), Jatropha (Jatropha curcas L.) and Sunflower (Helianthus annuus L.) Open

Sai Sudha Puvvala, Tarakeswari Muddanuru, Padmavathi A. V. Thangella, O. Aniel Kumar, Navajeet Chakravartty , et al. · 2019

Uncovering of natural allelic variants of key yield contributing genes by targeted resequencing in rice (Oryza sativa L.) Open

Lakshminarayana R. Vemireddy, Gopalakrishnamurty Kadambari, G. Eswara Reddy, Vijaya S.R. Kola, Eswarayya Ramireddy , et al. · 2019

Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (Oryza sativa ssp. indica cv. Purpleputtu) Open

V. B. Reddy Lachagari, Ravi Gupta, Sivarama Prasad Lekkala, Lakshmi Shree Kulumani Mahadevan, Boney Kuriakose , et al. · 2019

Purpleputtu (Oryza sativa ssp. indica cv. Purpleputtu) is a unique rice landrace from southern India that exhibits predominantly purple color. This study reports the underlying genetic complexity of the trait, associated dome…

Uncovering genome wide novel allelic variants for eating and cooking quality in a popular Indian rice cultivar, Samba Mahsuri Open

V. B. Reddy Lachagari, Reddaiah Bodanapu, Navajeet Chakravartty, Sivarama Prasad Lekkala, Krishna Lalam , et al. · 2019

Samba Mahsuri (SM) is an Indian elite rice cultivar preferred by farmers and consumers primarily due to its superior ‘eating and cooking qualities’ (ECQs), and ‘grain size and shape’ (GSS) traits. However, SM is found to be relatively stre…

Deciphering the unique SNPs among leading Indian Tomato Cultivars using Double Digestion Restriction Associated DNA sequencing Open

Reddaiah Bodanapu, Sreehari V Vasudevan, Sivarama Prasad Lekkala, Navajeet Chakravartty, Krishna Lalam , et al. · 2019

World-wide grown and consumed tomato (Solanum lycopersicum) crop used as model system for new cultivar and fruit development. Genetic and genomic research of Indian tomato cultivars will provide an insight to develop new breeding strategie…

Genome-wide comparative analysis of three local aromatic rice lines revealed novel markers Open

Chetan Bhanot, Navajeet Chakravartty, Neethu Divakaran, P. E. Rabins, Boney Kuriakose , et al. · 2017

Rice is the primary source of dietary energy for half of the World population, and 90% of them are present in developing countries in Asia. We have sequenced three local rice varieties Chenga, Tulai-panji, Kalonunia and compared with Oryza…

Draft genome sequence of Sclerospora graminicola, the pearl millet downy mildew pathogen Open

Navajeet Chakravartty, K.A.V.S. Krishna Mohan, V.B. Reddy Lachagari, S. Chandra Nayaka, Shekar H. Shetty , et al. · 2017

Sclerospora graminicola pathogen is the most important biotic production constraints of pearl millet in India, Africa and other parts of the world. We report a de novo whole genome assembly and analysis of pathotype 1, one of the most viru…

Genotyping of Tomato Cultivars and Hybrids using ddRAD Open

Krishna Lalam, Reddaiah Bodanapu, Durga Khandekar, Navitha Kokkonda, Sreehari V. Vasudevan , et al. · 2017

Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera and includes annual and perennial plants from diverse habitats. ddRAD-seq is one of the most cost…

Draft genome sequence of Sclerospora graminicola , the pearl millet downy mildew pathogen Open

S. Chandra Nayaka, H. Shekar Shetty, C. Tara Satyavathi, R. S. Yadav, P. B. Kavi Kishor , et al. · 2017

Discovery of single nucleotide polymorphism in Gossypium hirsutum and G. barbadense through next generation sequencing approach Open

Reddy S. Sudakara, I. S. Katageri, N. V. Mohan Kumar, Mangesh P. Jadhav, Sateesh Adiger , et al. · 2017

Single nucleotide polymorphism was identified using ddRAD and pooled amplicon sequencing between the allotetraploid cotton genotypes of G. hirsutum var. DS-28 (POOL-H) and G. barbadense var. SBYF-425 (POOL-B). The 471270 (470161 SNP and 11…

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