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View article: Spatially decoding genotype-associated epigenetic landscapes in human lymphoma FFPE tissues via epi-Patho-DBiT
Spatially decoding genotype-associated epigenetic landscapes in human lymphoma FFPE tissues via epi-Patho-DBiT Open
Chromatin organization within the cell nucleus governs the epigenetic regulation of diverse cellular functions and is tightly controlled within the spatial context of tissues. In human non-Hodgkin B-cell lymphoma (B-NHL), epigenetic regula…
View article: Exploring endothelial cell environments across organs in spatially resolved omics data
Exploring endothelial cell environments across organs in spatially resolved omics data Open
Endothelial cells are ubiquitously present in the human body and line the luminal surface of blood and lymphatic vessels. The oxygen-dependence of cells impacts their proximity to blood vessels, and consequently, to endothelial cells depen…
View article: Yale University Co_Profile Spatial-ATAC andRNA Sequencing via Deterministic Barcoding in Fresh Frozen Human Lymph Node Tissue v1
Yale University Co_Profile Spatial-ATAC andRNA Sequencing via Deterministic Barcoding in Fresh Frozen Human Lymph Node Tissue v1 Open
This protocol describes the use of Deterministic Barcoding in Tissue for spatial ATAC and RNA sequencing to construct epigenome and transcriptome atlases of fixed fresh frozen human lymph node tissue samples. This approach uses a microflui…
View article: Yale University Hematoxylin and Eosin (H&E) Staining for Formalin-Fixed Paraffin-Embedded Human Lymph Node Tissues Protocol Adapted fromVHIR-CIBERNED-ASAP v1
Yale University Hematoxylin and Eosin (H&E) Staining for Formalin-Fixed Paraffin-Embedded Human Lymph Node Tissues Protocol Adapted fromVHIR-CIBERNED-ASAP v1 Open
Hematoxylin and Eosin (H&E) Staining for for Formalin-Fixed Paraffin-Embedded Human Lymph Node Tissues after sectioning.
View article: Spatial Multi-omics Sequencing for Formalin-Fixed Paraffin Embedded Tissue via DBiT-seq v1
Spatial Multi-omics Sequencing for Formalin-Fixed Paraffin Embedded Tissue via DBiT-seq v1 Open
This protocol describes the use of Deterministic Barcoding in Tissue for spatial omics sequencing (DBiT-seq) platform to construct a multi-omics atlas on FFPE tissue samples. This approach uses a microfluidic-based method to introduce comb…
View article: Yale SenNet Human TMC - H&E staining following Phenocycler-Fusion Imaging v1
Yale SenNet Human TMC - H&E staining following Phenocycler-Fusion Imaging v1 Open
This protocol was adapted from (Yale Murine TMC - H&E staining following Phenocycler-Fusion Imaging) DOI: dx.doi.org/10.17504/protocols.io.ewov19zjklr2/v1 Flow cell removal after Phenocycler-Fusion imaging and following H&E staining steps …
View article: Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus
Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus Open
View article: Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus
Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus Open
Spatially mapping the transcriptome and proteome in the same tissue section can significantly advance our understanding of heterogeneous cellular processes and connect cell type to function. Here, we present Deterministic Barcoding in Tiss…
View article: Yale University adapted Akoya Phenocycler-Fusion Tissue Staining and Imaging Protocol for Fresh Frozen Human Lymph node Samples adapted from Indiana University v1
Yale University adapted Akoya Phenocycler-Fusion Tissue Staining and Imaging Protocol for Fresh Frozen Human Lymph node Samples adapted from Indiana University v1 Open
This protocol presents the Yale University TMC Akoya Phenocycler-Fusion Tissue Staining & Imaging Protocol for Fixated Fresh Frozen Human Lymph Node Samples. This protocol was adapted from Indiana University adapted Akoya Phenocycler-Fusio…
View article: Yale University_Spatial ATAC Sequencing for Fixed Fresh Frozen Human Lymph node Tissue via DBiT-seq v1
Yale University_Spatial ATAC Sequencing for Fixed Fresh Frozen Human Lymph node Tissue via DBiT-seq v1 Open
This protocol describes the use of Deterministic Barcoding in Tissue for spatial ATAC sequencing to construct an epigenome atlas of fixed fresh frozen human lymph node tissue samples. This approach uses a microfluidic-based method to intro…
View article: Control of innate immune response by biomaterial surface topography, energy, and stiffness
Control of innate immune response by biomaterial surface topography, energy, and stiffness Open
View article: Highly Selective Bionanosensor for Quick Detection of Bacterial Pathogens in Food
Highly Selective Bionanosensor for Quick Detection of Bacterial Pathogens in Food Open
View article: The Treatment of MDA-MB-231 Breast Cancer Cells with Biocompatible Manganese Iron Oxide Nanoparticles as Drug Carriers
The Treatment of MDA-MB-231 Breast Cancer Cells with Biocompatible Manganese Iron Oxide Nanoparticles as Drug Carriers Open