Nicholas Cooley
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View article: Addressing Background Genomic and Environmental Effects on Health through Accelerated Computing and Machine Learning: Results from the 2025 Hackathon at Carnegie Mellon University
Addressing Background Genomic and Environmental Effects on Health through Accelerated Computing and Machine Learning: Results from the 2025 Hackathon at Carnegie Mellon University Open
In March 2025, 34 scientists from the United States, Ireland, the United Kingdom, Switzerland,France, Germany, Spain, India, and Australia gathered in Pittsburgh, Pennsylvania and virtuallyfor a collaborative biohackathon, hosted by DNAnex…
The fourth annual Carnegie Mellon Libraries hackathon for biomedical data management, knowledge graphs, and deep learning Open
In October 2023, a group of 44 scientists hailing from several U.S. states, Canada, Poland, and Switzerland came together for a hybrid in-person and virtual hackathon. The event was jointly hosted by Carnegie Mellon University Libraries an…
View article: Many purported pseudogenes in bacterial genomes are bonafide genes - Multirun assemblies part 2
Many purported pseudogenes in bacterial genomes are bonafide genes - Multirun assemblies part 2 Open
GFFs and parsed data associated with re-assemblies of single SRA runs where a Biosample had multiple associated sequencing runs. Also includes assemblies, annotations, and parsed data for simulated reads.
View article: Many purported pseudogenes in bacterial genomes are bonafide genes - Multirun assemblies part 1
Many purported pseudogenes in bacterial genomes are bonafide genes - Multirun assemblies part 1 Open
FASTA files of assemblies generated from separate runs for the same Biosample.
View article: Many purported pseudogenes in bacterial genomes are bonafide genes - Factorial reassembly part 2
Many purported pseudogenes in bacterial genomes are bonafide genes - Factorial reassembly part 2 Open
Annotations and parsed data for a factorial reassembly of Refseq associated SRA reads.
View article: Many purported pseudogenes in bacterial genomes are bonafide genes - Factorial data part 1
Many purported pseudogenes in bacterial genomes are bonafide genes - Factorial data part 1 Open
Reassemblies of short reads associated with RefSeq biosamples under a variety of conditions.
SnpReportR: A Tool for Clinical Reporting of RNAseq Expression and Variants Open
With the increasing availability of next-generation sequencing (NGS), patients and non-specialist health care professionals are obtaining their genomic information without sufficient bioinformatics skills to analyze and interpret the data.…