Nicholas Costa Barroso Lima
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View article: Reductive evolution of virulence repertoire to drive the divergence between community- and hospital-associated methicillin-resistant <i>Staphylococcus aureus</i> of the ST1 lineage
Reductive evolution of virulence repertoire to drive the divergence between community- and hospital-associated methicillin-resistant <i>Staphylococcus aureus</i> of the ST1 lineage Open
Methicillin-resistant Staphylococcus aureus (MRSA) of the ST1-SCCmecIV lineage has been associated with community-acquired (CA) infections in North America and Australia. In Brazil, multi-drug resistant ST1-SCCmecIV MRSA has emerged in hos…
View article: Leveraging User-Friendly Network Approaches to Extract Knowledge From High-Throughput Omics Datasets
Leveraging User-Friendly Network Approaches to Extract Knowledge From High-Throughput Omics Datasets Open
Recent technological advances for the acquisition of multi-omics data have allowed an unprecedented understanding of the complex intricacies of biological systems. In parallel, a myriad of computational analysis techniques and bioinformati…
View article: Local Diversification of Methicillin- Resistant Staphylococcus aureus ST239 in South America After Its Rapid Worldwide Dissemination
Local Diversification of Methicillin- Resistant Staphylococcus aureus ST239 in South America After Its Rapid Worldwide Dissemination Open
The global spread of specific clones of methicillin-resistant Staphylococcus aureus (MRSA) has become a major public health problem, and understanding the dynamics of geographical spread requires worldwide surveillance. Over the past 20 ye…
View article: Additional file 4: of Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi
Additional file 4: of Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi Open
Table S1. Sheet NCBI ID: Accession numbers for sequences deposited on NCBI. Sheet Metadata: metadata for the isolates studied. (XLSX 15 kb)
View article: Additional file 1: of Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi
Additional file 1: of Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi Open
Table S2. Sheet 1. General information about the isolates assembled. Sheet 2. Average Nucleotide Identity calculated by BLAST. Sheet 3. Average Nucleotide Identity calculated by MUMMER. (XLSX 71 kb)
View article: Additional file 2: of Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi
Additional file 2: of Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi Open
Table S3. Ampicilin, ciprofloxacin, chloramphenicol, ceftriaxone, and cotrimoxazole resistance. (XLSX 50 kb)
View article: Comparative mitogenomic analyses of Amazona parrots and Psittaciformes
Comparative mitogenomic analyses of Amazona parrots and Psittaciformes Open
Amazon parrots are long-lived birds with highly developed cognitive skills, including vocal learning. Several parrot mitogenomes have been sequenced, but important aspects of their organization and evolution are not fully understood or hav…
View article: Comparative mitogenomic analyses of Amazona parrots and Psittaciformes
Comparative mitogenomic analyses of Amazona parrots and Psittaciformes Open
Amazon parrots are long-lived birds with highly developed cognitive skills, including vocal learning. Several parrot mitogenomes have been sequenced, but important aspects of their organization and evolution are not fully understood or hav…
View article: A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, <i>Limnoperna fortunei</i>
A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel, <i>Limnoperna fortunei</i> Open
Background For more than 25 years, the golden mussel, Limnoperna fortunei, has aggressively invaded South American freshwaters, having travelled more than 5000 km upstream across 5 countries. Along the way, the golden mussel has outcompete…
View article: The heavy strand dilemma of vertebrate mitochondria on genome sequencing age: number of encoded genes or G + T content?
The heavy strand dilemma of vertebrate mitochondria on genome sequencing age: number of encoded genes or G + T content? Open
The heavy strand dilemma of vertebrate mitochondria on genome sequencing age: number of encoded genes or G + T content?
View article: Complete Genome Sequence of the MRSA Isolate HC1335 from ST239 Lineage Displaying a Truncated AgrC Histidine Kinase Receptor
Complete Genome Sequence of the MRSA Isolate HC1335 from ST239 Lineage Displaying a Truncated AgrC Histidine Kinase Receptor Open
Methicillin-resistant Staphylococcus aureus (MRSA) is still one of the most important hospital pathogen globally. The multiresistant isolates of the ST239-SCCmecIII lineage are spread over large geographic regions, colonizing and infecting…
View article: Additional file 1: Table S1. of Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil
Additional file 1: Table S1. of Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil Open
InDels into homopolymeric regions of the GV69 complete genome sequence in comparison with TW20 complete genome. (XLS 48 kb)