Yimeng Nie
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View article: A study of repetitive sequences in the genome of <i>Sinopodisma qinlingensis</i>
A study of repetitive sequences in the genome of <i>Sinopodisma qinlingensis</i> Open
The family Acrididae characterized by a remarkable genome size and a significant proportion of repetitive sequences. In this study, we find a considerable characteristics by examining the Sinopodisma qinlingensis , which has an average gen…
View article: Evolutionary dynamics of repetitive elements and their relationship with genome size in Acrididae
Evolutionary dynamics of repetitive elements and their relationship with genome size in Acrididae Open
It is widely accepted that repetitive elements (REs) represent the primary mechanism driving genome size variation across eukaryotes. The observed genome sizes and REs of 59 species within the Acrididae were obtained and characterized. The…
View article: Repetitive element expansions contribute to genome size gigantism in Pamphagidae: A comparative study (Orthoptera, Acridoidea)
Repetitive element expansions contribute to genome size gigantism in Pamphagidae: A comparative study (Orthoptera, Acridoidea) Open
Pamphagidae is a family of Acridoidea that inhabits the desert steppes of Eurasia and Africa. This study employed flow cytometry to estimate the genome size of eight species in the Pamphagidae. The results indicate that the genome size of …
View article: Comprehensive analysis of the Xya riparia genome uncovers the dominance of DNA transposons, LTR/Gypsy elements, and their evolutionary dynamics
Comprehensive analysis of the Xya riparia genome uncovers the dominance of DNA transposons, LTR/Gypsy elements, and their evolutionary dynamics Open
Transposable elements (TEs) are DNA sequences that can move or replicate within a genome, and their study has become increasingly important in understanding genome evolution and function. The Tridactylidae family, including Xya riparia (py…
View article: A Chromosome-Level Genome Assembly and Annotation for the<i>Oecanthus rufescens</i>(Orthoptera: Oecanthidae)
A Chromosome-Level Genome Assembly and Annotation for the<i>Oecanthus rufescens</i>(Orthoptera: Oecanthidae) Open
Oecanthus is a genus of cricket known for its distinctive chirping and distributed across major zoogeographical regions worldwide. This study focuses on Oecanthus rufescens, and conducts a comprehensive examination of its genome through ge…
View article: Repetitive Element Expansions Contribute to Genome Size Gigantism in Pamphagidae (Orthoptera: Acridoidea)
Repetitive Element Expansions Contribute to Genome Size Gigantism in Pamphagidae (Orthoptera: Acridoidea) Open
View article: Genomic and Transcriptomic Perspectives on the Origin, Evolution, and Application of Numts in Orthoptera
Genomic and Transcriptomic Perspectives on the Origin, Evolution, and Application of Numts in Orthoptera Open
View article: Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism
Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism Open
View article: Additional file 2 of Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism
Additional file 2 of Transposable element expansion and low-level piRNA silencing in grasshoppers may cause genome gigantism Open
Additional file 2: Table S1. Proportion of repetitive elements in the genome. Table S2. Comparative analysis of repeat sequences in two species. Table S3. List of 41 TEs shared in the two species (copy number >500). Table S4. Annotations o…
View article: The Evolutionary Patterns of Genome Size in Ensifera (Insecta: Orthoptera)
The Evolutionary Patterns of Genome Size in Ensifera (Insecta: Orthoptera) Open
Genomic size variation has long been a focus for biologists. However, due to the lack of genome size data, the mechanisms behind this variation and the biological significance of insect genome size are rarely studied systematically. The de…
View article: Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta
Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta Open
Comparative studies of insect genome size show that Orthoptera is a unique group of Insecta with a significantly enlarged genome. To determine a suitable internal standard for a large genome and to compare the effects of different internal…
View article: MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects
MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects Open
View article: MtOrt: An empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects
MtOrt: An empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects Open
Background Amino acid substitution models play an important role in inferring phylogenies from mitochondrial proteins. Although different amino acid substitution models have been proposed, only a few were estimated from mitochondrial prote…
View article: MtOrt: An empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects
MtOrt: An empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects Open
Background Amino acid substitution models play an important role in inferring phylogenies from mitochondrial proteins. Although different amino acid substitution models have been proposed, only a few were estimated from mitochondrial prote…
View article: Additional file 6 of MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects
Additional file 6 of MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects Open
Additional file 6: Table S2. Taxonomic information and GenBank accession numbers for the taxa used in this study.
View article: Additional file 1 of MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects
Additional file 1 of MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects Open
Additional file 1: Table S1. Information on the samples used in the present study.
View article: Additional file 2 of MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects
Additional file 2 of MtOrt: an empirical mitochondrial amino acid substitution model for evolutionary studies of Orthoptera insects Open
Additional file 2. The mtOrt, mtOrt_O, mtOrt_C and mtOrt_E models.