Nilam Malankar
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View article: The ZAT14 family promotes cell death and regulates expansins to affect xylem formation and salt tolerance in Arabidopsis
The ZAT14 family promotes cell death and regulates expansins to affect xylem formation and salt tolerance in Arabidopsis Open
The ability for stress to modify development is common in plants yet how external cues determine phenotypic outputs and developmental responses is not fully understood. Here, we uncovered a ZINC FINGER OF ARABIDOPSIS THALIANA14 (ZAT14) tra…
View article: The ZAT14 family promotes cell death and regulates expansins to affect xylem formation and salt tolerance in Arabidopsis
The ZAT14 family promotes cell death and regulates expansins to affect xylem formation and salt tolerance in Arabidopsis Open
The ability for stress to modify development is common in plants; yet, how external cues determine phenotypic outputs and developmental responses is not fully understood. Here, we uncovered a ZINC FINGER OF ARABIDOPSIS THALIANA14 (ZAT14) t…
View article: Development of aerial and belowground tubers in potato is governed by photoperiod and epigenetic mechanism
Development of aerial and belowground tubers in potato is governed by photoperiod and epigenetic mechanism Open
Plants exhibit diverse developmental plasticity and modulate growth responses under various environmental conditions. Potato (Solanum tuberosum), a modified stem and an important food crop, serves as a substantial portion of the world’s su…
View article: Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Our study suggests that sRNAs and their selective target genes could be associated with the regulation of early stages of stolon-to-tuber transitions in a photoperiod-dependent manner in potato.
View article: MiRNA160 is associated with local defense and systemic acquired resistance against Phytophthora infestans infection in potato
MiRNA160 is associated with local defense and systemic acquired resistance against Phytophthora infestans infection in potato Open
To combat pathogen infection, plants employ local defenses in infected sites and elicit systemic acquired resistance (SAR) in distant tissues. MicroRNAs have been shown to play a significant role in local defense, but their association wit…
View article: Additional file 7: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 7: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S6. B2G annotation for miRNA targets (XLSX 210 kb)
View article: Additional file 8: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 8: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S7. TAS loci prediction (XLSX 104 kb)
View article: Additional file 2: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 2: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S1. List of primers (XLSX 12 kb)
View article: Additional file 3: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 3: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S2. List of conserved and novel miRNAs (XLSX 104 kb)
View article: Additional file 4: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 4: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S3. DE analysis- Conserved miRNAs (XLSX 112 kb)
View article: Additional file 5: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 5: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S4. DE analysis- Novel miRNAs (XLSX 113 kb)
View article: Additional file 10: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 10: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S9. B2G annotation for siRNA targets (XLSX 489 kb)
View article: Additional file 6: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 6: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S5. psRNA targets- Conserved and Novel miRNAs (XLSX 217 kb)
View article: Additional file 9: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions
Additional file 9: of Genome-wide transcriptome analysis reveals small RNA profiles involved in early stages of stolon-to-tuber transitions in potato under photoperiodic conditions Open
Table S8 siRNAs from TAS and target prediction (XLSX 377 kb)