Parva Kumar Sharma
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View article: Transcriptome profiling as a means to provide molecular evidence for the decline of tree bean (Parkia Roxburghii G. Don) and the creation of its web-genomic resource
Transcriptome profiling as a means to provide molecular evidence for the decline of tree bean (Parkia Roxburghii G. Don) and the creation of its web-genomic resource Open
View article: <i>WUSCHEL-D1</i> upregulation enhances grain number by inducing formation of multiovary-producing florets in wheat
<i>WUSCHEL-D1</i> upregulation enhances grain number by inducing formation of multiovary-producing florets in wheat Open
Innovative genetic improvements in food crops are needed to maintain global food security. Here, we report the map-based cloning of TaWUSCHEL-D1 ( WUS-D1 ) as the gene responsible for the multiovary phenotype in wheat, which produces three…
View article: Contextual Science and Genome Analysis for Air-Gapped AI Research
Contextual Science and Genome Analysis for Air-Gapped AI Research Open
Provided here is a study of large language models (LLMs) and retrieval augmented generation (RAG) frameworks in air-gapped environments for genome research on small grain crops. We developed two main applications: (1) a RAG-based system fo…
View article: In-depth genome and comparative genome analysis of a metal-resistant environmental isolate Pseudomonas aeruginosa S-8
In-depth genome and comparative genome analysis of a metal-resistant environmental isolate Pseudomonas aeruginosa S-8 Open
The present study aimed to identify the mechanisms underlying the survival of an environmental bacterium originally isolated from the waste-contaminated soil of Jhiri, Ranchi, India. Based on 16S rRNA, ANI (average nucleotide identity), an…
View article: Comparative transcriptome and co-expression network analysis uncovers the regulatory mechanism of silicon-induced soybean defense against charcoal rot disease
Comparative transcriptome and co-expression network analysis uncovers the regulatory mechanism of silicon-induced soybean defense against charcoal rot disease Open
Soybean (Glycine max L.) is highly susceptible to charcoal rot caused by the soil-borne pathogen Macrophomina phaseolina, which can reduce yields by up to 70 %. Effective control methods are lacking, and information on managing the disease…
View article: Origin and evolution of the bread wheat D genome
Origin and evolution of the bread wheat D genome Open
View article: Comparative Transcriptome and Co-Expression Network Analysis Uncovers the Regulatory Mechanism of Silicon-Induced Soybean Defense Against Charcoal Rot Disease
Comparative Transcriptome and Co-Expression Network Analysis Uncovers the Regulatory Mechanism of Silicon-Induced Soybean Defense Against Charcoal Rot Disease Open
View article: Origin and evolution of the bread wheat D genome
Origin and evolution of the bread wheat D genome Open
Bread wheat ( Triticum aestivum ) is a globally dominant crop and major source of calories and proteins for the human diet. Compared to its wild ancestors, modern bread wheat shows lower genetic diversity caused by polyploidisation, domest…
View article: Genome Sequences from Diploids and Wild Relatives of Wheat for Comparative Genomics and Alien Introgressions
Genome Sequences from Diploids and Wild Relatives of Wheat for Comparative Genomics and Alien Introgressions Open
Bread wheat is an important food source worldwide, contributing ~20% of the caloric intake per person worldwide. Due to a domestication bottleneck and highly selective breeding for key traits, modern wheat cultivars have a narrow genetic b…
View article: Einkorn genomics sheds light on history of the oldest domesticated wheat
Einkorn genomics sheds light on history of the oldest domesticated wheat Open
Einkorn ( Triticum monococcum ) was the first domesticated wheat species, and was central to the birth of agriculture and the Neolithic Revolution in the Fertile Crescent around 10,000 years ago 1,2 . Here we generate and analyse 5.2-Gb ge…
View article: Characterization and in-depth genome analysis of a halotolerant probiotic bacterium Paenibacillus sp. S-12, a multifarious bacterium isolated from Rauvolfia serpentina
Characterization and in-depth genome analysis of a halotolerant probiotic bacterium Paenibacillus sp. S-12, a multifarious bacterium isolated from Rauvolfia serpentina Open
View article: In-depth genome and pan-genome analysis of a metal-resistant bacterium Pseudomonas parafulva OS-1
In-depth genome and pan-genome analysis of a metal-resistant bacterium Pseudomonas parafulva OS-1 Open
A metal-resistant bacterium Pseudomonas parafulva OS-1 was isolated from waste-contaminated soil in Ranchi City, India. The isolated strain OS-1 showed its growth at 25–45°C, pH 5.0–9.0, and in the presence of ZnSO 4 (upto 5 mM). Phylogene…
View article: An online database for einkorn wheat to aid in gene discovery and functional genomics studies
An online database for einkorn wheat to aid in gene discovery and functional genomics studies Open
Diploid A-genome wheat (einkorn wheat) presents a nutrition-rich option as an ancient grain crop and a resource for the improvement of bread wheat against abiotic and biotic stresses. Realizing the importance of this wheat species, referen…
View article: Identification of a major QTL, Parth6.1 associated with parthenocarpic fruit development in slicing cucumber genotype, Pusa Parthenocarpic Cucumber-6
Identification of a major QTL, Parth6.1 associated with parthenocarpic fruit development in slicing cucumber genotype, Pusa Parthenocarpic Cucumber-6 Open
Parthenocarpy is an extremely important trait that revolutionized the worldwide cultivation of cucumber under protected conditions. Pusa Parthenocarpic Cucumber-6 (PPC-6) is one of the important commercially cultivated varieties under prot…
View article: Genome wide identification of lncRNAs and circRNAs having regulatory role in fruit shelf life in health crop cucumber (Cucumis sativus L.)
Genome wide identification of lncRNAs and circRNAs having regulatory role in fruit shelf life in health crop cucumber (Cucumis sativus L.) Open
Cucumber is an extremely perishable vegetable; however, under room conditions, the fruits become unfit for consumption 2–3 days after harvesting. One natural variant, DC-48 with an extended shelf-life was identified, fruits of which can be…
View article: Development and validation of novel SSR markers using transcriptome data in okra (Abelmoschus esculentus L.)- A genetically orphan crop
Development and validation of novel SSR markers using transcriptome data in okra (Abelmoschus esculentus L.)- A genetically orphan crop Open
Background Okra is an important vegetable crop of the Malvaceae family grown for its tender pods. Unknown genome size, polyploidy and lack of sufficient molecular markers hindering the genetic improvement of okra. Molecular markers are imp…
View article: Groundnut Bud Necrosis Virus Modulates the Expression of Innate Immune, Endocytosis, and Cuticle Development-Associated Genes to Circulate and Propagate in Its Vector, Thrips palmi
Groundnut Bud Necrosis Virus Modulates the Expression of Innate Immune, Endocytosis, and Cuticle Development-Associated Genes to Circulate and Propagate in Its Vector, Thrips palmi Open
Thrips palmi (Thysanoptera: Thripidae) is the predominant tospovirus vector in Asia-Pacific region. It transmits economically damaging groundnut bud necrosis virus (GBNV, family Tospoviridae ) in a persistent propagative manner. Thrips ser…
View article: Fruit transcriptional profiling of the contrasting genotypes for shelf life reveals the key candidate genes and molecular pathways regulating post-harvest biology in cucumber
Fruit transcriptional profiling of the contrasting genotypes for shelf life reveals the key candidate genes and molecular pathways regulating post-harvest biology in cucumber Open
Cucumber fruits are perishable in nature and become unfit for market within 2-3 days of harvesting. A natural variant, DC-48 with exceptionally high shelf life was developed and used to dissect the genetic architecture and molecular mechan…
View article: Development of Genome-Wide Functional Markers Using Draft Genome Assembly of Guava (Psidium guajava L.) cv. Allahabad Safeda to Expedite Molecular Breeding
Development of Genome-Wide Functional Markers Using Draft Genome Assembly of Guava (Psidium guajava L.) cv. Allahabad Safeda to Expedite Molecular Breeding Open
Guava ( Psidium guajava L.), a rich source of nutrients, is an important tropical and subtropical fruit of the Myrtaceae family and exhibits magnificent diversity. Genetic diversity analysis is the first step toward the identification of p…
View article: Evolution of endonuclease IV protein family: an in silico analysis
Evolution of endonuclease IV protein family: an in silico analysis Open