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View article: A new chromosome-level genome assembly for western painted turtle Chrysemys picta belli, a model for extreme physiological adaptations
A new chromosome-level genome assembly for western painted turtle Chrysemys picta belli, a model for extreme physiological adaptations Open
The western painted turtle, Chrysemys picta bellii, has the greatest tolerance to anoxia of any tetrapod studied to date. These turtles reside in the northern United States and southern Canada, and survive months of anoxia while submerged …
View article: Reinstatement and expansion of the genus<i>Anatherum</i>(Andropogoneae, Panicoideae, Poaceae)
Reinstatement and expansion of the genus<i>Anatherum</i>(Andropogoneae, Panicoideae, Poaceae) Open
The genus Andropogon sensu lato is known to be polyphyletic. Accordingly, we here adjust part of the classification of the genus to reflect its evolutionary history and morphological diversity. A plastome phylogeny including 20 new plastom…
View article: Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World
Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World Open
Phlebotomine sand flies are of global significance as important vectors of human disease, transmitting bacterial, viral, and protozoan pathogens, including the kinetoplastid parasites of the genus Leishmania , the causative agents of devas…
View article: Plant conservation assessment at scale: Rapid triage of extinction risks
Plant conservation assessment at scale: Rapid triage of extinction risks Open
Societal Impact Statement The current rate of global biodiversity loss creates a pressing need to increase efficiency and throughput of extinction risk assessments in plants. We must assess as many plant species as possible, working with i…
View article: Plant conservation assessment at scale: rapid triage of extinction risks
Plant conservation assessment at scale: rapid triage of extinction risks Open
Summary The IUCN Red List criteria are widely used to determine extinction risks of plant and animal life. Here, we use The Red List’s criterion B, Geographic Range Size, to provide preliminary conservation assessments of the members of a …
View article: A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism
A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism Open
The domestic cat ( Felis catus ) numbers over 94 million in the USA alone, occupies households as a companion animal, and, like humans, suffers from cancer and common and rare diseases. However, genome-wide sequence variant information is …
View article: Additional file 16 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 16 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Viral read presence in quail samples
View article: Additional file 10 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 10 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Pathway analysis from photoperiod study
View article: Additional file 12 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 12 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
List of differentially expressed genes, FDR 1.6 in infection study
View article: Additional file 8 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 8 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
List of selection signatures detected from the HSR / LSR lines
View article: Additional file 11 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 11 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Sequences of cathelicidins and defensin genes identified in quail genome
View article: Additional file 3 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 3 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Location of breakpoints between chicken and quail chromosomes
View article: Additional file 9 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 9 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Statistics from photoperiod differential expression study
View article: Additional file 13 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 13 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Overrepresented GO terms in differentially expressed genes in infection study
View article: Additional file 4 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 4 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Percent of quail genes with orthologs identified in related bird genomes
View article: Additional file 1 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 1 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
List of unannotated quail genes and their manual annotation
View article: Additional file 6 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 6 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
BED file containing location of ERVs in turkey genome
View article: Additional file 7 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 7 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
A comparative summary of assembled ERVs in quail, chicken and turkey
View article: Additional file 14 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 14 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
List of the cluster of genes upregulated in duck at day 1 during HPAI infection, with the corresponding fold changes in each species. NS = Not significantly differentially regulated
View article: Additional file 15 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 15 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
Regulation of IFITM, MHC and TLR family genes in quail, chicken and duck following HPAI and LPAI infection
View article: Additional file 5 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response
Additional file 5 of The quail genome: insights into social behaviour, seasonal biology and infectious disease response Open
BED file containing location of ERVs in quail genome
The Piranha Genome Provides Molecular Insight Associated to Its Unique Feeding Behavior Open
The piranha enjoys notoriety due to its infamous predatory behavior but much is still not understood about its evolutionary origins and the underlying molecular mechanisms for its unusual feeding biology. We sequenced and assembled the red…
View article: The quail as an avian model system: its genome provides insights into social behaviour, seasonal biology and infectious disease response
The quail as an avian model system: its genome provides insights into social behaviour, seasonal biology and infectious disease response Open
The Japanese quail ( Coturnix japonica ) is a popular domestic poultry species and an increasingly significant model species in avian developmental, behavioural and disease research. We have produced a high-quality quail genome sequence, s…
View article: Whole-Genome Sequencing of Klebsiella pneumoniae Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection
Whole-Genome Sequencing of Klebsiella pneumoniae Isolates to Track Strain Progression in a Single Patient With Recurrent Urinary Tract Infection Open
Klebsiella pneumoniae is an important uropathogen that increasingly harbors broad-spectrum antibiotic resistance determinants. Evidence suggests that some same-strain recurrences in women with frequent urinary tract infections (UTIs) may e…
View article: The Glossina Genome Cluster: Comparative Genomic Analysis of the Vectors of African Trypanosomes
The Glossina Genome Cluster: Comparative Genomic Analysis of the Vectors of African Trypanosomes Open
Background: Tsetse flies (Glossina sp.) are the sole vectors of human and animal trypanosomiasis throughout sub-Saharan Africa. Tsetse are distinguished from other Diptera by unique adaptations, including lactation and the birthing of live…
View article: Symbiotic organs shaped by distinct modes of genome evolution in cephalopods
Symbiotic organs shaped by distinct modes of genome evolution in cephalopods Open
Microbes have been critical drivers of evolutionary innovation in animals. To understand the processes that influence the origin of specialized symbiotic organs, we report the sequencing and analysis of the genome of Euprymna scolopes , a …
View article: Additional file 4: of Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes
Additional file 4: of Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes Open
Orthology group species composition data. (XLSX 3807 kb)