Paul P. Dijkwel
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View article: Genome-Wide Analysis of the SRPP/REF Gene Family in Taraxacum kok-saghyz Provides Insights into Its Expression Patterns in Response to Ethylene and Methyl Jasmonate Treatments
Genome-Wide Analysis of the SRPP/REF Gene Family in Taraxacum kok-saghyz Provides Insights into Its Expression Patterns in Response to Ethylene and Methyl Jasmonate Treatments Open
Taraxacum kok-saghyz (TKS) is a model plant and a potential rubber-producing crop for the study of natural rubber (NR) biosynthesis. The precise analysis of the NR biosynthesis mechanism is an important theoretical basis for improving rubb…
View article: The complete chloroplast genome of the first registered <i>Paeonia</i> Itoh hybrid cv. Hexie in China
The complete chloroplast genome of the first registered <i>Paeonia</i> Itoh hybrid cv. Hexie in China Open
The first registered Paeonia Itoh hybrid cv. Hexie in China is a naturally occurring intersectional hybrid of Sect. Paeonia and Sect. Moutan. In this study, we sequenced, assembled, and analyzed the complete chloroplast genome of Paeonia I…
View article: Genome-Wide Analysis of BBX Gene Family in Three Medicago Species Provides Insights into Expression Patterns under Hormonal and Salt Stresses
Genome-Wide Analysis of BBX Gene Family in Three Medicago Species Provides Insights into Expression Patterns under Hormonal and Salt Stresses Open
BBX protein is a class of zinc finger transcription factors that have B-box domains at the N-terminus, and some of these proteins contain a CCT domain at the C-terminus. It plays an important role in plant growth, development, and metaboli…
View article: Corrigendum: Methylome changes in Lolium perenne associated with long-term colonisation by the endophytic fungus Epichloë sp. LpTG-3 strain AR37
Corrigendum: Methylome changes in Lolium perenne associated with long-term colonisation by the endophytic fungus Epichloë sp. LpTG-3 strain AR37 Open
[This corrects the article DOI: 10.3389/fpls.2023.1258100.].
View article: Methylome changes in Lolium perenne associated with long-term colonisation by the endophytic fungus Epichloë sp. LpTG-3 strain AR37
Methylome changes in Lolium perenne associated with long-term colonisation by the endophytic fungus Epichloë sp. LpTG-3 strain AR37 Open
Epichloë spp. often form mutualistic interactions with cool-season grasses, such as Lolium perenne . However, the molecular mechanisms underlying this interaction remain poorly understood. In this study, we employed reduced representation …
View article: Comparison of leaf senescence regulation between distantly related plant species uncovers knowledge gaps and opportunities for plant improvement strategies
Comparison of leaf senescence regulation between distantly related plant species uncovers knowledge gaps and opportunities for plant improvement strategies Open
Leaf senescence is a destructive process that allows the efficient recycling of nutrients from dying leaves to growing parts of the plant. It is the final stage of leaf development that can be induced in response to stress. This makes leaf…
View article: Comparative Transcriptomics of Multi-Stress Responses in Pachycladon cheesemanii and Arabidopsis thaliana
Comparative Transcriptomics of Multi-Stress Responses in Pachycladon cheesemanii and Arabidopsis thaliana Open
The environment is seldom optimal for plant growth and changes in abiotic and biotic signals, including temperature, water availability, radiation and pests, induce plant responses to optimise survival. The New Zealand native plant species…
View article: Comparative Transcriptomics of Multi-Stress Responses in <em>Pachycladon cheesemanii</em> and <em>Arabidopsis thaliana</em>
Comparative Transcriptomics of Multi-Stress Responses in <em>Pachycladon cheesemanii</em> and <em>Arabidopsis thaliana</em> Open
The environment is seldom optimal for plant growth and changes in abiotic and biotic signals, including temperature, water availability, radiation and pests, induce plant responses to optimise survival. The New Zealand native plant species…
View article: Strigolactones regulate sepal senescence in Arabidopsis
Strigolactones regulate sepal senescence in Arabidopsis Open
Flower sepals are critical for flower development and vary greatly in life span depending on their function post-pollination. Very little is known about what controls sepal longevity. Using a sepal senescence mutant screen, we identified t…
View article: Fungal Endophyte Colonization Patterns Alter Over Time in the Novel Association Between Lolium perenne and Epichloë Endophyte AR37
Fungal Endophyte Colonization Patterns Alter Over Time in the Novel Association Between Lolium perenne and Epichloë Endophyte AR37 Open
Infection of the pasture grass Lolium perenne with the seed-transmitted fungal endophyte Epichloë festucae enhances its resilience to biotic and abiotic stress. Agricultural benefits of endophyte infection can be increased by generating no…
View article: Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age
Developmentally controlled changes during Arabidopsis leaf development indicate causes for loss of stress tolerance with age Open
Leaf senescence is the final stage of leaf development and is induced by the gradual occurrence of age-related changes (ARCs). The process of leaf senescence has been well described, but the cellular events leading to this process are stil…
View article: Functional analysis of RXLR effectors from the New Zealand kauri dieback pathogen <i>Phytophthora agathidicida</i>
Functional analysis of RXLR effectors from the New Zealand kauri dieback pathogen <i>Phytophthora agathidicida</i> Open
New Zealand kauri is an ancient, iconic, gymnosperm tree species that is under threat from a lethal dieback disease caused by the oomycete Phytophthora agathidicida . To gain insight into this pathogen, we determined whether proteinaceous …
View article: Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance
Putative alternative translation start site-encoding nucleotides of CPR5 regulate growth and resistance Open
Background The Arabidopsis CONSTITUTIVE EXPRESSER of PATHOGENESIS-RELATED GENES 5 (CPR5) has recently been shown to play a role in gating as part of the nuclear pore complex (NPC). Mutations in CPR5 cause multiple defects, including aberra…
View article: <i>Camellia</i>Plant Resistance and Susceptibility to Petal Blight Disease Are Defined by the Timing of Defense Responses
<i>Camellia</i>Plant Resistance and Susceptibility to Petal Blight Disease Are Defined by the Timing of Defense Responses Open
The family Sclerotiniaceae includes important phytopathogens, such as Botrytis cinerea and Sclerotinia sclerotiorum, that activate plant immune responses to facilitate infection propagation. The mechanisms of plant resistance to these necr…
View article: Conservation and expansion of a necrosis‐inducing small secreted protein family from host‐variable phytopathogens of the Sclerotiniaceae
Conservation and expansion of a necrosis‐inducing small secreted protein family from host‐variable phytopathogens of the Sclerotiniaceae Open
Fungal effector proteins facilitate host‐plant colonization and have generally been characterized as small secreted proteins (SSPs). We classified and functionally tested SSPs from the secretomes of three closely related necrotrophic phyto…
View article: Strigolactone defective mutants of<i>Arabidopsis</i>exhibit delayed sepal senescence
Strigolactone defective mutants of<i>Arabidopsis</i>exhibit delayed sepal senescence Open
Flower sepals are critical for flower development and vary greatly in lifespan depending on their function postpollination. However, very little is known on what controls sepal longevity. Using a sepal senescence mutant screen, we directly…
View article: Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation
Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation Open
Abiotic stress is one of the major threats to plant crop yield and productivity. When plants are exposed to stress, production of reactive oxygen species (ROS) increases, which could lead to extensive cellular damage and hence crop loss. D…
View article: Efficient nonenzymatic cyclization and domain shuffling drive pyrrolopyrazine diversity from truncated variants of a fungal NRPS
Efficient nonenzymatic cyclization and domain shuffling drive pyrrolopyrazine diversity from truncated variants of a fungal NRPS Open
Nonribosomal peptide synthetases (NRPSs) generate the core peptide scaffolds of many natural products. These include small cyclic dipeptides such as the insect feeding deterrent peramine, which is a pyrrolopyrazine (PPZ) produced by grass-…
View article: Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand's high ultraviolet B radiation environment
Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand's high ultraviolet B radiation environment Open
Background Pachycladon cheesemanii is a close relative of Arabidopsis thaliana and is an allotetraploid perennial herb which is widespread in the South Island of New Zealand. It grows at altitudes of up to 1000 m where it is subject to rel…
View article: Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment
Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment Open
Background Pachycladon cheesemanii is a close relative of Arabidopsis thaliana and is an allotetraploid perennial herb which is widespread in the South Island of New Zealand. It grows at altitudes of up to 1000 m where it is subject to rel…
View article: <i>Phytophthora agathidicida</i> : research progress, cultural perspectives and knowledge gaps in the control and management of kauri dieback in New Zealand
<i>Phytophthora agathidicida</i> : research progress, cultural perspectives and knowledge gaps in the control and management of kauri dieback in New Zealand Open
Kauri ( Agathis australis ), which is one of the world's largest and longest‐living conifer species, is under threat from a root and collar dieback disease caused by the oomycete pathogen Phytophthora agathidicida . The noted incidence of …
View article: Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation
Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation Open
Abiotic stress is one of the major threats to plant crop yield and productivity. When plants are exposed to stress, production of reactive oxygen species (ROS) increases, which could lead to extensive cellular damage and hence crop loss. D…
View article: Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation
Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation Open
Abiotic stress is one of the major threats to plant crop yield and productivity. When plants are exposed to stress, production of reactive oxygen species (ROS) increases, which could lead to extensive cellular damage and hence crop loss. D…
View article: MOESM6 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment
MOESM6 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment Open
Additional file 6. KEGG pathway annotation for all genes obtained from KEGG Automated Annotation Server (KAAS).
View article: Hypothesis: Plant stem cells hold the key to extreme longevity
Hypothesis: Plant stem cells hold the key to extreme longevity Open
Theories of ageing explain how multicellular organisms age by means of an immortal germ line and a perishable soma, whereby accumulated damage is preferentially distributed to the soma. Plants do not clearly separate germline and somatic c…
View article: MOESM5 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment
MOESM5 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment Open
Additional file 5. Distribution of Simple Sequence Repeats (SSR) markers identified using MISA.
View article: MOESM9 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment
MOESM9 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment Open
Additional file 9. Sequences of genes used for RT-qPCR analysis.
View article: MOESM7 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment
MOESM7 of Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment Open
Additional file 7. Gene Ontology annotation for all genes obtained from BLAST similarity searches.