Peter E. Larsen
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View article: Microbiomes of 2024’s Periodical Cicada Brood XIII Vary By Species and Location
Microbiomes of 2024’s Periodical Cicada Brood XIII Vary By Species and Location Open
The 17-year Periodical cicadas (Magicicada spp.) are long-lived insects that emerge in mass synchronized events after 17 years underground. Their survival and ecological success depend heavily on their microbiomes, which include obligate b…
View article: Evidence of Significant Intratumoral Transcriptomic Heterogeneity in Non-functioning Pituitary Adenomas Based on Location and Texture
Evidence of Significant Intratumoral Transcriptomic Heterogeneity in Non-functioning Pituitary Adenomas Based on Location and Texture Open
Introduction Surgical resection remains a standard treatment of non-functioning pituitary adenomas (NFPA). These tumors have significant intratumoral variability of growth rates and texture hardness. This preliminary study aims to identify…
View article: A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency
A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency Open
Introduction Phosphorus (P) deficiency in plants creates a variety of metabolic perturbations that decrease photosynthesis and growth. Phosphorus deficiency is especially challenging for the production of bioenergy feedstock plantation spe…
View article: Evidence of Significant Intratumoral Transcriptomic Heterogeneity in Non-functioning Pituitary Adenomas Based on Location and Texture
Evidence of Significant Intratumoral Transcriptomic Heterogeneity in Non-functioning Pituitary Adenomas Based on Location and Texture Open
Purpose Pituitary adenomas are one of the most common primary tumors of the central nervous system, and surgical resection remains a standard treatment. These tumors have significant intratumoral variability of growth rates and texture har…
View article: First trimester “clean catch” urine and vaginal swab sample distinct microbiological niches
First trimester “clean catch” urine and vaginal swab sample distinct microbiological niches Open
Untreated asymptomatic bacteriuria (ASB) has been associated with adverse pregnancy outcomes. Thus, routine screening by standard urine culture (SUC) and treatment of ASB are currently recommended for all pregnant women. However, SUC often…
View article: Data from Effects of Human Oral Mucosal Tissue, Saliva, and Oral Microflora on Intraoral Metabolism and Bioactivation of Black Raspberry Anthocyanins
Data from Effects of Human Oral Mucosal Tissue, Saliva, and Oral Microflora on Intraoral Metabolism and Bioactivation of Black Raspberry Anthocyanins Open
Our oral cancer chemoprevention trial data implied that patient-specific differences in local retention and metabolism of freeze-dried components of black raspberries (BRB) affected therapeutic responsiveness. Subsequent studies have confi…
View article: Data from Effects of Human Oral Mucosal Tissue, Saliva, and Oral Microflora on Intraoral Metabolism and Bioactivation of Black Raspberry Anthocyanins
Data from Effects of Human Oral Mucosal Tissue, Saliva, and Oral Microflora on Intraoral Metabolism and Bioactivation of Black Raspberry Anthocyanins Open
Our oral cancer chemoprevention trial data implied that patient-specific differences in local retention and metabolism of freeze-dried components of black raspberries (BRB) affected therapeutic responsiveness. Subsequent studies have confi…
View article: Supplementary Table S1 from Effects of a Topically Applied Bioadhesive Berry Gel on Loss of Heterozygosity Indices in Premalignant Oral Lesions
Supplementary Table S1 from Effects of a Topically Applied Bioadhesive Berry Gel on Loss of Heterozygosity Indices in Premalignant Oral Lesions Open
Supplementary Table S1 from Effects of a Topically Applied Bioadhesive Berry Gel on Loss of Heterozygosity Indices in Premalignant Oral Lesions
View article: Data from Topical Application of a Mucoadhesive Freeze-Dried Black Raspberry Gel Induces Clinical and Histologic Regression and Reduces Loss of Heterozygosity Events in Premalignant Oral Intraepithelial Lesions: Results from a Multicentered, Placebo-Controlled Clinical Trial
Data from Topical Application of a Mucoadhesive Freeze-Dried Black Raspberry Gel Induces Clinical and Histologic Regression and Reduces Loss of Heterozygosity Events in Premalignant Oral Intraepithelial Lesions: Results from a Multicentered, Placebo-Controlled Clinical Trial Open
Purpose: Approximately 30% higher grade premalignant oral intraepithelial neoplasia (OIN) lesions will progress to oral cancer. Although surgery is the OIN treatment mainstay, many OIN lesions recur, which is highly problematic for …
View article: On-axis digital holographic microscopy: Current trends and algorithms
On-axis digital holographic microscopy: Current trends and algorithms Open
Digital holographic microscopy (DHM) is a rapidly developing imaging technique that allows for the reconstruction of three-dimensional images from holographic data. In this review paper, we present an overview of the state-of-the-art in on…
View article: Modeling interaction networks between host, diet, and bacteria predicts obesogenesis in a mouse model
Modeling interaction networks between host, diet, and bacteria predicts obesogenesis in a mouse model Open
Host-microbiome interactions are known to have substantial effects on human health, but the diversity of the human microbiome makes it difficult to definitively attribute specific microbiome features to a host phenotype. One approach to ov…
View article: Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network
Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network Open
View article: Low-cost, open-source XYZ nanopositioner for high-precision analytical applications
Low-cost, open-source XYZ nanopositioner for high-precision analytical applications Open
Nanoscale positioning has numerous applications in both academia and industry. A growing number of applications require devices with long working distances and nanoscale resolutions. Friction-inertia piezoelectric positioners, which are ba…
View article: Distribution of Anthocyanins Delivered from a Bioadhesive Black Raspberry Gel Following Topical Intraoral Application in Normal Healthy Volunteers
Distribution of Anthocyanins Delivered from a Bioadhesive Black Raspberry Gel Following Topical Intraoral Application in Normal Healthy Volunteers Open
Results from our oral cavity chemoprevention trial demonstrated appreciable interpatient variations regarding chemopreventive efficacy of a freeze dried black raspberry (FBR) gel. We speculated these data reflected individual patient-relat…
View article: Quantifying Optical Absorption of Single Plasmonic Nanoparticles and Nanoparticle Dimers Using Microstring Resonators
Quantifying Optical Absorption of Single Plasmonic Nanoparticles and Nanoparticle Dimers Using Microstring Resonators Open
The wide and ever-increasing applications of thermoplasmonics demand the need for sensitive and reliable tools to probe optical absorptions of individual nanoparticles. However, most of the currently available techniques focus only on meas…
View article: Single particles as resonators for thermomechanical analysis
Single particles as resonators for thermomechanical analysis Open
View article: Data for EMSL Project 49346 from March 2020
Data for EMSL Project 49346 from March 2020 Open
View article: CRISPR interference to interrogate genes that control biofilm formation in Pseudomonas fluorescens
CRISPR interference to interrogate genes that control biofilm formation in Pseudomonas fluorescens Open
View article: Pyrolytic carbon resonators for micromechanical thermal analysis
Pyrolytic carbon resonators for micromechanical thermal analysis Open
Thermal analysis is essential for the characterization of polymers and drugs. However, the currently established methods require a large amount of sample. Here, we present pyrolytic carbon resonators as promising tools for micromechanical …
View article: The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata Open
View article: Imaging of dehydration in particulate matter using Raman line-focus microscopy
Imaging of dehydration in particulate matter using Raman line-focus microscopy Open
Crystalline solids can incorporate water molecules into their crystal lattice causing a dramatic impact on their properties. This explains the increasing interest in understanding the dehydration pathways of these solids. However, the clas…
View article: Electrochemical pyrolytic carbon resonators for mass sensing on electrodeposited polymers
Electrochemical pyrolytic carbon resonators for mass sensing on electrodeposited polymers Open
View article: Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings
Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings Open
View article: Additional file 9: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
Additional file 9: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata Open
Transcription factor family expansions and contractions. (XLSX 30 kb)
View article: Additional file 2: of Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings
Additional file 2: of Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings Open
RPKM scores for all samples. This file includes results from Bowstap analysis of transcriptomic data for aspen gene expression and ANOVA results. Data types are ‘Unique RPKM’ which disregards sequence fragments that align to more than one …
View article: Additional file 1: of Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings
Additional file 1: of Pseudomonas fluorescens increases mycorrhization and modulates expression of antifungal defense response genes in roots of aspen seedlings Open
Table of RNAseq alignments. Table presents total number of reads per sequencing reaction, number of reads that align to each community member, and the percent of total aligned reads that align to each community member. (XLSX 9 kb)
View article: Additional file 11: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
Additional file 11: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata Open
Slow- and fast-evolving proteins. (ZIP 104 kb)
View article: Additional file 5: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
Additional file 5: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata Open
Sexual reproduction and candidate genes. (ZIP 182 kb)
View article: Additional file 7: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
Additional file 7: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata Open
Expanded and contracted families. (ZIP 220 kb)
View article: Additional file 6: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata
Additional file 6: of The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata Open
In vitro culture and gene expression. (ZIP 1530 kb)